Strain Fitness in Sinorhizobium meliloti 1021 around SMc03240

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03238 and SMc03239 are separated by 144 nucleotidesSMc03239 and SMc03240 are separated by 157 nucleotidesSMc03240 and SMc03241 are separated by 46 nucleotidesSMc03241 and SMc03242 are separated by 343 nucleotides SMc03238: SMc03238 - hypothetical protein, at 3,347,296 to 3,347,589 SMc03238 SMc03239: SMc03239 - inorganic pyrophosphatase, at 3,347,734 to 3,348,267 SMc03239 SMc03240: SMc03240 - signal peptide protein, at 3,348,425 to 3,349,027 SMc03240 SMc03241: SMc03241 - hypothetical protein, at 3,349,074 to 3,349,580 SMc03241 SMc03242: SMc03242 - GTP-binding protein, at 3,349,924 to 3,351,750 SMc03242 Position (kb) 3348 3349 3350Strain fitness (log2 ratio) -3 -2 -1 0 1at 3347.587 kb on + strandat 3347.588 kb on - strandat 3347.643 kb on + strandat 3347.644 kb on - strandat 3347.644 kb on - strandat 3347.659 kb on + strandat 3347.736 kb on - strandat 3348.402 kb on + strandat 3348.402 kb on + strandat 3348.406 kb on + strandat 3348.407 kb on - strandat 3348.407 kb on - strandat 3348.444 kb on - strandat 3348.449 kb on - strandat 3348.497 kb on + strand, within SMc03240at 3348.497 kb on + strand, within SMc03240at 3348.576 kb on + strand, within SMc03240at 3348.650 kb on + strand, within SMc03240at 3348.651 kb on - strand, within SMc03240at 3348.651 kb on - strand, within SMc03240at 3348.651 kb on - strand, within SMc03240at 3348.651 kb on - strand, within SMc03240at 3348.872 kb on + strand, within SMc03240at 3348.873 kb on - strand, within SMc03240at 3348.971 kb on + strandat 3348.972 kb on - strandat 3349.169 kb on + strand, within SMc03241at 3349.170 kb on - strand, within SMc03241at 3349.170 kb on - strand, within SMc03241at 3349.170 kb on - strand, within SMc03241at 3349.297 kb on + strand, within SMc03241at 3349.298 kb on - strand, within SMc03241at 3349.298 kb on - strand, within SMc03241at 3349.298 kb on - strand, within SMc03241at 3349.299 kb on + strand, within SMc03241at 3349.300 kb on - strand, within SMc03241at 3349.300 kb on - strand, within SMc03241at 3349.300 kb on - strand, within SMc03241at 3349.300 kb on - strand, within SMc03241at 3349.490 kb on - strand, within SMc03241at 3349.594 kb on - strandat 3349.859 kb on - strandat 3349.925 kb on + strandat 3349.925 kb on + strandat 3349.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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3,347,587 + -0.6
3,347,588 - -0.8
3,347,643 + -0.3
3,347,644 - -0.7
3,347,644 - +0.3
3,347,659 + -0.9
3,347,736 - -2.6
3,348,402 + -1.5
3,348,402 + +1.0
3,348,406 + -0.3
3,348,407 - +0.3
3,348,407 - -0.7
3,348,444 - +1.0
3,348,449 - -0.9
3,348,497 + SMc03240 0.12 -0.4
3,348,497 + SMc03240 0.12 -1.5
3,348,576 + SMc03240 0.25 -0.2
3,348,650 + SMc03240 0.37 -0.6
3,348,651 - SMc03240 0.37 -0.1
3,348,651 - SMc03240 0.37 +0.4
3,348,651 - SMc03240 0.37 -0.2
3,348,651 - SMc03240 0.37 -0.4
3,348,872 + SMc03240 0.74 -0.9
3,348,873 - SMc03240 0.74 -2.0
3,348,971 + -0.0
3,348,972 - -0.3
3,349,169 + SMc03241 0.19 -0.6
3,349,170 - SMc03241 0.19 +1.6
3,349,170 - SMc03241 0.19 -3.5
3,349,170 - SMc03241 0.19 -1.8
3,349,297 + SMc03241 0.44 +0.9
3,349,298 - SMc03241 0.44 -0.3
3,349,298 - SMc03241 0.44 +0.1
3,349,298 - SMc03241 0.44 -2.0
3,349,299 + SMc03241 0.44 +0.5
3,349,300 - SMc03241 0.45 +1.6
3,349,300 - SMc03241 0.45 +0.3
3,349,300 - SMc03241 0.45 +1.7
3,349,300 - SMc03241 0.45 -1.0
3,349,490 - SMc03241 0.82 -0.5
3,349,594 - -0.4
3,349,859 - -0.1
3,349,925 + +1.3
3,349,925 + +0.0
3,349,983 - -0.7

Or see this region's nucleotide sequence