Experiment: Thallium(I) acetate 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02460 and SMc02333 are separated by 2 nucleotides SMc02333 and SMc02334 are separated by 4 nucleotides SMc02334 and SMc02335 overlap by 4 nucleotides
SMc02460: SMc02460 - hypothetical protein, at 2,751,005 to 2,751,895
SMc02460
SMc02333: SMc02333 - hypothetical protein, at 2,751,898 to 2,752,644
SMc02333
SMc02334: SMc02334 - pentose kinase transmembrane protein, at 2,752,649 to 2,754,196
SMc02334
SMc02335: SMc02335 - pentose kinase, at 2,754,193 to 2,755,722
SMc02335
Position (kb)
2752
2753
2754
2755 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2751.746 kb on + strand, within SMc02460 at 2751.747 kb on - strand, within SMc02460 at 2751.747 kb on - strand, within SMc02460 at 2751.747 kb on - strand, within SMc02460 at 2751.865 kb on - strand at 2751.870 kb on - strand at 2751.873 kb on + strand at 2751.873 kb on + strand at 2751.894 kb on - strand at 2751.894 kb on - strand at 2751.894 kb on - strand at 2751.908 kb on + strand at 2751.908 kb on + strand at 2751.909 kb on - strand at 2751.909 kb on - strand at 2751.970 kb on - strand at 2752.161 kb on + strand, within SMc02333 at 2752.161 kb on + strand, within SMc02333 at 2752.161 kb on + strand, within SMc02333 at 2752.162 kb on - strand, within SMc02333 at 2752.760 kb on + strand at 2752.810 kb on + strand, within SMc02334 at 2752.810 kb on + strand, within SMc02334 at 2752.945 kb on - strand, within SMc02334 at 2752.948 kb on + strand, within SMc02334 at 2752.949 kb on - strand, within SMc02334 at 2753.054 kb on + strand, within SMc02334 at 2753.055 kb on - strand, within SMc02334 at 2753.055 kb on - strand, within SMc02334 at 2753.165 kb on - strand, within SMc02334 at 2753.183 kb on + strand, within SMc02334 at 2753.205 kb on - strand, within SMc02334 at 2753.225 kb on + strand, within SMc02334 at 2753.226 kb on - strand, within SMc02334 at 2753.226 kb on - strand, within SMc02334 at 2753.373 kb on + strand, within SMc02334 at 2753.373 kb on + strand, within SMc02334 at 2753.374 kb on - strand, within SMc02334 at 2753.426 kb on + strand, within SMc02334 at 2753.427 kb on - strand, within SMc02334 at 2754.105 kb on - strand at 2754.105 kb on - strand at 2754.429 kb on - strand, within SMc02335 at 2754.562 kb on + strand, within SMc02335 at 2754.562 kb on + strand, within SMc02335 at 2754.562 kb on + strand, within SMc02335 at 2754.563 kb on - strand, within SMc02335 at 2754.563 kb on - strand, within SMc02335 at 2754.683 kb on - strand, within SMc02335 at 2754.683 kb on - strand, within SMc02335 at 2754.683 kb on - strand, within SMc02335
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml remove 2,751,746 + SMc02460 0.83 +0.4 2,751,747 - SMc02460 0.83 -0.1 2,751,747 - SMc02460 0.83 -0.4 2,751,747 - SMc02460 0.83 -0.1 2,751,865 - +0.1 2,751,870 - -0.3 2,751,873 + +0.4 2,751,873 + +2.4 2,751,894 - +0.1 2,751,894 - -2.1 2,751,894 - +0.4 2,751,908 + -1.1 2,751,908 + +0.7 2,751,909 - +1.2 2,751,909 - -3.7 2,751,970 - +3.0 2,752,161 + SMc02333 0.35 -0.3 2,752,161 + SMc02333 0.35 -0.1 2,752,161 + SMc02333 0.35 +0.3 2,752,162 - SMc02333 0.35 -0.6 2,752,760 + +1.8 2,752,810 + SMc02334 0.10 -1.3 2,752,810 + SMc02334 0.10 -3.3 2,752,945 - SMc02334 0.19 +1.7 2,752,948 + SMc02334 0.19 +0.5 2,752,949 - SMc02334 0.19 -0.6 2,753,054 + SMc02334 0.26 +1.1 2,753,055 - SMc02334 0.26 -0.3 2,753,055 - SMc02334 0.26 +0.5 2,753,165 - SMc02334 0.33 -0.5 2,753,183 + SMc02334 0.34 +0.7 2,753,205 - SMc02334 0.36 +0.2 2,753,225 + SMc02334 0.37 +0.3 2,753,226 - SMc02334 0.37 -0.5 2,753,226 - SMc02334 0.37 -2.6 2,753,373 + SMc02334 0.47 +1.0 2,753,373 + SMc02334 0.47 -1.8 2,753,374 - SMc02334 0.47 -0.8 2,753,426 + SMc02334 0.50 -0.7 2,753,427 - SMc02334 0.50 -0.4 2,754,105 - +0.4 2,754,105 - -0.0 2,754,429 - SMc02335 0.15 -0.0 2,754,562 + SMc02335 0.24 -0.6 2,754,562 + SMc02335 0.24 +0.3 2,754,562 + SMc02335 0.24 +4.3 2,754,563 - SMc02335 0.24 -1.0 2,754,563 - SMc02335 0.24 -0.3 2,754,683 - SMc02335 0.32 +1.2 2,754,683 - SMc02335 0.32 -1.0 2,754,683 - SMc02335 0.32 +0.1
Or see this region's nucleotide sequence