Strain Fitness in Sinorhizobium meliloti 1021 around SMc01634

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01633 and SMc01634 overlap by 1 nucleotidesSMc01634 and SMc01635 are separated by 4 nucleotidesSMc01635 and SMc01636 are separated by 91 nucleotides SMc01633: SMc01633 - ABC transporter permease, at 2,425,834 to 2,426,700 SMc01633 SMc01634: SMc01634 - ABC transporter permease, at 2,426,700 to 2,427,518 SMc01634 SMc01635: SMc01635 - oxidoreductase, at 2,427,523 to 2,428,284 SMc01635 SMc01636: SMc01636 - transcriptional regulator, at 2,428,376 to 2,429,347 SMc01636 Position (kb) 2426 2427 2428Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2425.869 kb on + strandat 2426.044 kb on - strand, within SMc01633at 2426.105 kb on - strand, within SMc01633at 2426.105 kb on - strand, within SMc01633at 2426.105 kb on - strand, within SMc01633at 2426.105 kb on - strand, within SMc01633at 2426.107 kb on + strand, within SMc01633at 2426.108 kb on - strand, within SMc01633at 2426.108 kb on - strand, within SMc01633at 2426.108 kb on - strand, within SMc01633at 2426.194 kb on - strand, within SMc01633at 2426.197 kb on + strand, within SMc01633at 2426.197 kb on + strand, within SMc01633at 2426.197 kb on + strand, within SMc01633at 2426.198 kb on - strand, within SMc01633at 2426.198 kb on - strand, within SMc01633at 2426.198 kb on - strand, within SMc01633at 2426.198 kb on - strand, within SMc01633at 2426.209 kb on + strand, within SMc01633at 2426.209 kb on + strandat 2426.209 kb on + strand, within SMc01633at 2426.209 kb on + strand, within SMc01633at 2426.210 kb on - strand, within SMc01633at 2426.210 kb on - strand, within SMc01633at 2426.210 kb on - strand, within SMc01633at 2426.311 kb on + strand, within SMc01633at 2426.312 kb on - strand, within SMc01633at 2426.344 kb on + strand, within SMc01633at 2426.345 kb on - strand, within SMc01633at 2426.345 kb on - strand, within SMc01633at 2426.345 kb on - strand, within SMc01633at 2426.500 kb on + strand, within SMc01633at 2426.736 kb on + strandat 2427.232 kb on - strand, within SMc01634at 2427.232 kb on - strand, within SMc01634at 2427.232 kb on - strand, within SMc01634at 2427.232 kb on - strand, within SMc01634at 2427.232 kb on - strand, within SMc01634at 2427.381 kb on + strand, within SMc01634at 2427.382 kb on - strand, within SMc01634at 2427.460 kb on + strandat 2427.460 kb on + strandat 2427.461 kb on - strandat 2427.464 kb on + strandat 2427.464 kb on + strandat 2427.464 kb on + strandat 2427.961 kb on + strand, within SMc01635at 2427.962 kb on - strand, within SMc01635at 2427.982 kb on + strand, within SMc01635at 2428.037 kb on - strand, within SMc01635at 2428.045 kb on + strand, within SMc01635at 2428.144 kb on + strand, within SMc01635at 2428.144 kb on + strand, within SMc01635at 2428.144 kb on + strand, within SMc01635at 2428.145 kb on - strandat 2428.145 kb on - strand, within SMc01635at 2428.234 kb on + strandat 2428.234 kb on + strandat 2428.234 kb on + strandat 2428.235 kb on - strandat 2428.235 kb on - strandat 2428.484 kb on + strand, within SMc01636

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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2,425,869 + -0.2
2,426,044 - SMc01633 0.24 +0.2
2,426,105 - SMc01633 0.31 +0.5
2,426,105 - SMc01633 0.31 -0.2
2,426,105 - SMc01633 0.31 +0.7
2,426,105 - SMc01633 0.31 -1.0
2,426,107 + SMc01633 0.31 -0.3
2,426,108 - SMc01633 0.32 -1.6
2,426,108 - SMc01633 0.32 -0.2
2,426,108 - SMc01633 0.32 -1.8
2,426,194 - SMc01633 0.42 +0.7
2,426,197 + SMc01633 0.42 -0.2
2,426,197 + SMc01633 0.42 -1.2
2,426,197 + SMc01633 0.42 -1.3
2,426,198 - SMc01633 0.42 -1.3
2,426,198 - SMc01633 0.42 +0.5
2,426,198 - SMc01633 0.42 +0.2
2,426,198 - SMc01633 0.42 +0.3
2,426,209 + SMc01633 0.43 -0.3
2,426,209 + +3.3
2,426,209 + SMc01633 0.43 +0.2
2,426,209 + SMc01633 0.43 -1.4
2,426,210 - SMc01633 0.43 -1.5
2,426,210 - SMc01633 0.43 +1.5
2,426,210 - SMc01633 0.43 -0.4
2,426,311 + SMc01633 0.55 -1.1
2,426,312 - SMc01633 0.55 -1.3
2,426,344 + SMc01633 0.59 -0.1
2,426,345 - SMc01633 0.59 +0.3
2,426,345 - SMc01633 0.59 -1.7
2,426,345 - SMc01633 0.59 +0.4
2,426,500 + SMc01633 0.77 +0.4
2,426,736 + -1.6
2,427,232 - SMc01634 0.65 -0.5
2,427,232 - SMc01634 0.65 +0.3
2,427,232 - SMc01634 0.65 -0.1
2,427,232 - SMc01634 0.65 -0.5
2,427,232 - SMc01634 0.65 -1.0
2,427,381 + SMc01634 0.83 -2.1
2,427,382 - SMc01634 0.83 -0.5
2,427,460 + -2.1
2,427,460 + +0.1
2,427,461 - -1.8
2,427,464 + -0.7
2,427,464 + -0.3
2,427,464 + +1.8
2,427,961 + SMc01635 0.57 +1.4
2,427,962 - SMc01635 0.58 -0.9
2,427,982 + SMc01635 0.60 +0.2
2,428,037 - SMc01635 0.67 -2.1
2,428,045 + SMc01635 0.69 +0.3
2,428,144 + SMc01635 0.81 -2.1
2,428,144 + SMc01635 0.81 +1.3
2,428,144 + SMc01635 0.81 -0.4
2,428,145 - +0.5
2,428,145 - SMc01635 0.82 +0.1
2,428,234 + -0.5
2,428,234 + +1.3
2,428,234 + +0.3
2,428,235 - -0.4
2,428,235 - -1.6
2,428,484 + SMc01636 0.11 +0.4

Or see this region's nucleotide sequence