Experiment: Thallium(I) acetate 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01578 and SMc01580 are separated by 397 nucleotides SMc01580 and SMc01581 overlap by 8 nucleotides SMc01581 and SMc01583 are separated by 125 nucleotides
SMc01578: SMc01578 - aspartate aminotransferase, at 2,515,844 to 2,517,046
SMc01578
SMc01580: SMc01580 - hypothetical protein, at 2,517,444 to 2,517,641
SMc01580
SMc01581: SMc01581 - hypothetical protein, at 2,517,634 to 2,517,915
SMc01581
SMc01583: SMc01583 - hypothetical protein, at 2,518,041 to 2,519,231
SMc01583
Position (kb)
2517
2518 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2516.665 kb on - strand, within SMc01578 at 2516.665 kb on - strand, within SMc01578 at 2516.676 kb on + strand, within SMc01578 at 2516.677 kb on - strand, within SMc01578 at 2516.856 kb on + strand, within SMc01578 at 2516.857 kb on - strand, within SMc01578 at 2517.014 kb on + strand at 2517.085 kb on + strand at 2517.086 kb on - strand at 2517.117 kb on + strand at 2517.118 kb on - strand at 2517.118 kb on - strand at 2517.124 kb on - strand at 2517.124 kb on - strand at 2517.211 kb on + strand at 2517.212 kb on - strand at 2517.438 kb on + strand at 2517.438 kb on + strand at 2517.439 kb on - strand at 2517.443 kb on + strand at 2517.443 kb on + strand at 2517.507 kb on + strand, within SMc01580 at 2517.507 kb on + strand, within SMc01580 at 2517.507 kb on + strand, within SMc01580 at 2517.507 kb on + strand, within SMc01580 at 2517.507 kb on + strand, within SMc01580 at 2517.508 kb on - strand, within SMc01580 at 2517.508 kb on - strand, within SMc01580 at 2517.573 kb on - strand, within SMc01580 at 2517.573 kb on - strand, within SMc01580 at 2517.766 kb on + strand, within SMc01581 at 2517.766 kb on + strand, within SMc01581 at 2517.767 kb on - strand, within SMc01581 at 2517.767 kb on - strand, within SMc01581 at 2517.767 kb on - strand, within SMc01581 at 2517.796 kb on + strand, within SMc01581 at 2517.914 kb on - strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.081 kb on + strand at 2518.082 kb on - strand at 2518.082 kb on - strand at 2518.082 kb on - strand at 2518.082 kb on - strand at 2518.082 kb on - strand at 2518.082 kb on - strand at 2518.082 kb on - strand at 2518.090 kb on + strand at 2518.091 kb on - strand at 2518.091 kb on - strand at 2518.091 kb on - strand at 2518.416 kb on + strand, within SMc01583 at 2518.416 kb on + strand, within SMc01583 at 2518.416 kb on + strand, within SMc01583 at 2518.416 kb on + strand, within SMc01583 at 2518.417 kb on - strand, within SMc01583 at 2518.417 kb on - strand, within SMc01583 at 2518.860 kb on + strand, within SMc01583 at 2518.894 kb on - strand, within SMc01583 at 2518.894 kb on - strand, within SMc01583 at 2518.894 kb on - strand, within SMc01583
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml remove 2,516,665 - SMc01578 0.68 -1.2 2,516,665 - SMc01578 0.68 -0.1 2,516,676 + SMc01578 0.69 -0.0 2,516,677 - SMc01578 0.69 -0.1 2,516,856 + SMc01578 0.84 -1.1 2,516,857 - SMc01578 0.84 +0.6 2,517,014 + -0.0 2,517,085 + +0.1 2,517,086 - +0.1 2,517,117 + -0.2 2,517,118 - -0.1 2,517,118 - +0.2 2,517,124 - -1.7 2,517,124 - -0.1 2,517,211 + +0.9 2,517,212 - -2.4 2,517,438 + -0.6 2,517,438 + -0.3 2,517,439 - -1.1 2,517,443 + +0.2 2,517,443 + +0.4 2,517,507 + SMc01580 0.32 -3.1 2,517,507 + SMc01580 0.32 -0.1 2,517,507 + SMc01580 0.32 -0.9 2,517,507 + SMc01580 0.32 -0.6 2,517,507 + SMc01580 0.32 -3.0 2,517,508 - SMc01580 0.32 +1.6 2,517,508 - SMc01580 0.32 -2.0 2,517,573 - SMc01580 0.65 +1.5 2,517,573 - SMc01580 0.65 -0.5 2,517,766 + SMc01581 0.47 -0.4 2,517,766 + SMc01581 0.47 -0.3 2,517,767 - SMc01581 0.47 -0.6 2,517,767 - SMc01581 0.47 -2.0 2,517,767 - SMc01581 0.47 +0.7 2,517,796 + SMc01581 0.57 -0.3 2,517,914 - -0.5 2,518,081 + -1.5 2,518,081 + -1.2 2,518,081 + -1.9 2,518,081 + -1.0 2,518,081 + +0.9 2,518,081 + +1.5 2,518,081 + +1.2 2,518,081 + -0.2 2,518,081 + -1.6 2,518,081 + -0.7 2,518,081 + -1.2 2,518,082 - +0.5 2,518,082 - -0.4 2,518,082 - -0.1 2,518,082 - -1.8 2,518,082 - -0.6 2,518,082 - -1.7 2,518,082 - -1.1 2,518,090 + -0.1 2,518,091 - -0.4 2,518,091 - +0.3 2,518,091 - -0.7 2,518,416 + SMc01583 0.31 -0.1 2,518,416 + SMc01583 0.31 -0.6 2,518,416 + SMc01583 0.31 +1.3 2,518,416 + SMc01583 0.31 -3.3 2,518,417 - SMc01583 0.32 -0.9 2,518,417 - SMc01583 0.32 -1.2 2,518,860 + SMc01583 0.69 +0.2 2,518,894 - SMc01583 0.72 -1.1 2,518,894 - SMc01583 0.72 -0.0 2,518,894 - SMc01583 0.72 +0.2
Or see this region's nucleotide sequence