Strain Fitness in Sinorhizobium meliloti 1021 around SMc00980

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00981 and SMc00980 are separated by 1 nucleotidesSMc00980 and SMc00979 are separated by 295 nucleotides SMc00981: SMc00981 - ferredoxin protein, at 956,324 to 957,418 SMc00981 SMc00980: SMc00980 - hypothetical protein, at 957,420 to 958,445 SMc00980 SMc00979: SMc00979 - hypothetical protein, at 958,741 to 959,154 SMc00979 Position (kb) 957 958 959Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 956.534 kb on + strand, within SMc00981at 956.534 kb on + strand, within SMc00981at 956.535 kb on - strand, within SMc00981at 956.535 kb on - strand, within SMc00981at 956.535 kb on - strand, within SMc00981at 956.536 kb on + strand, within SMc00981at 956.537 kb on - strand, within SMc00981at 956.537 kb on - strand, within SMc00981at 956.537 kb on - strand, within SMc00981at 956.705 kb on + strand, within SMc00981at 957.068 kb on + strand, within SMc00981at 957.365 kb on + strandat 957.365 kb on + strandat 957.534 kb on + strand, within SMc00980at 957.705 kb on + strand, within SMc00980at 957.706 kb on - strand, within SMc00980at 957.706 kb on - strand, within SMc00980at 957.819 kb on - strand, within SMc00980at 957.844 kb on + strand, within SMc00980at 957.845 kb on - strand, within SMc00980at 957.922 kb on + strand, within SMc00980at 957.922 kb on + strand, within SMc00980at 957.923 kb on - strand, within SMc00980at 957.994 kb on + strand, within SMc00980at 957.994 kb on + strand, within SMc00980at 957.995 kb on - strand, within SMc00980at 958.057 kb on + strand, within SMc00980at 958.112 kb on - strand, within SMc00980at 958.163 kb on - strand, within SMc00980at 958.163 kb on - strand, within SMc00980at 958.163 kb on - strand, within SMc00980at 958.218 kb on - strand, within SMc00980at 958.238 kb on + strand, within SMc00980at 958.239 kb on - strand, within SMc00980at 958.339 kb on + strand, within SMc00980at 958.339 kb on + strand, within SMc00980at 958.339 kb on + strand, within SMc00980at 958.340 kb on - strand, within SMc00980at 958.455 kb on + strandat 958.455 kb on + strandat 958.456 kb on - strandat 958.507 kb on - strandat 958.507 kb on - strandat 958.517 kb on - strandat 958.517 kb on - strandat 958.562 kb on - strandat 958.678 kb on - strandat 958.886 kb on - strand, within SMc00979at 958.888 kb on + strand, within SMc00979at 958.906 kb on + strand, within SMc00979at 958.907 kb on - strand, within SMc00979at 958.907 kb on - strand, within SMc00979at 958.913 kb on - strand, within SMc00979at 958.957 kb on + strand, within SMc00979at 958.961 kb on - strand, within SMc00979at 958.975 kb on + strand, within SMc00979at 959.000 kb on + strand, within SMc00979at 959.065 kb on + strand, within SMc00979at 959.074 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.105 kb on - strand, within SMc00979at 959.114 kb on - strandat 959.114 kb on - strandat 959.116 kb on - strandat 959.149 kb on - strandat 959.164 kb on + strandat 959.165 kb on - strandat 959.166 kb on + strandat 959.166 kb on + strandat 959.167 kb on - strandat 959.356 kb on + strandat 959.356 kb on + strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.371 kb on + strandat 959.400 kb on + strandat 959.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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956,534 + SMc00981 0.19 -1.0
956,534 + SMc00981 0.19 +0.1
956,535 - SMc00981 0.19 +1.1
956,535 - SMc00981 0.19 -3.1
956,535 - SMc00981 0.19 -0.8
956,536 + SMc00981 0.19 +0.1
956,537 - SMc00981 0.19 -0.1
956,537 - SMc00981 0.19 +0.3
956,537 - SMc00981 0.19 +1.8
956,705 + SMc00981 0.35 -1.1
957,068 + SMc00981 0.68 -2.0
957,365 + +0.2
957,365 + +0.4
957,534 + SMc00980 0.11 +0.7
957,705 + SMc00980 0.28 +1.4
957,706 - SMc00980 0.28 -2.2
957,706 - SMc00980 0.28 -0.5
957,819 - SMc00980 0.39 +0.1
957,844 + SMc00980 0.41 +0.1
957,845 - SMc00980 0.41 +0.6
957,922 + SMc00980 0.49 -0.7
957,922 + SMc00980 0.49 -0.1
957,923 - SMc00980 0.49 -1.6
957,994 + SMc00980 0.56 -0.3
957,994 + SMc00980 0.56 +2.1
957,995 - SMc00980 0.56 +0.2
958,057 + SMc00980 0.62 -0.3
958,112 - SMc00980 0.67 +0.7
958,163 - SMc00980 0.72 -0.0
958,163 - SMc00980 0.72 +0.1
958,163 - SMc00980 0.72 +0.9
958,218 - SMc00980 0.78 +0.2
958,238 + SMc00980 0.80 -0.8
958,239 - SMc00980 0.80 +0.9
958,339 + SMc00980 0.90 +2.7
958,339 + SMc00980 0.90 +1.2
958,339 + SMc00980 0.90 +0.1
958,340 - SMc00980 0.90 -1.0
958,455 + -0.6
958,455 + -0.2
958,456 - -0.2
958,507 - -0.0
958,507 - +0.3
958,517 - +0.2
958,517 - +0.3
958,562 - +0.7
958,678 - -0.4
958,886 - SMc00979 0.35 +1.2
958,888 + SMc00979 0.36 -0.4
958,906 + SMc00979 0.40 +1.0
958,907 - SMc00979 0.40 -2.9
958,907 - SMc00979 0.40 -0.8
958,913 - SMc00979 0.42 +3.0
958,957 + SMc00979 0.52 -1.0
958,961 - SMc00979 0.53 +0.2
958,975 + SMc00979 0.57 -0.8
959,000 + SMc00979 0.63 -0.1
959,065 + SMc00979 0.78 +0.7
959,074 + SMc00979 0.80 -0.6
959,104 + SMc00979 0.88 +2.6
959,104 + SMc00979 0.88 -0.7
959,104 + SMc00979 0.88 -2.0
959,104 + SMc00979 0.88 -0.8
959,104 + SMc00979 0.88 +1.1
959,105 - SMc00979 0.88 -0.1
959,114 - -1.0
959,114 - +0.1
959,116 - +2.0
959,149 - -0.0
959,164 + -0.9
959,165 - -0.0
959,166 + +1.4
959,166 + -1.8
959,167 - -0.5
959,356 + -0.3
959,356 + -0.5
959,357 - +0.5
959,357 - +0.1
959,357 - -2.1
959,371 + -0.6
959,400 + +1.6
959,401 - +1.1

Or see this region's nucleotide sequence