Strain Fitness in Sinorhizobium meliloti 1021 around SMc00923

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00924 and SMc00923 are separated by 285 nucleotidesSMc00923 and SMc00922 are separated by 74 nucleotides SMc00924: SMc00924 - hypothetical protein, at 858,648 to 859,388 SMc00924 SMc00923: SMc00923 - DNA-3-methyladenine DNA glycosylase, at 859,674 to 860,309 SMc00923 SMc00922: SMc00922 - transporter transmembrane protein, at 860,384 to 861,841 SMc00922 Position (kb) 859 860 861Strain fitness (log2 ratio) -2 -1 0 1 2at 858.688 kb on + strandat 858.782 kb on - strand, within SMc00924at 858.795 kb on + strand, within SMc00924at 858.795 kb on + strand, within SMc00924at 858.796 kb on - strand, within SMc00924at 858.796 kb on - strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.856 kb on + strand, within SMc00924at 858.856 kb on + strand, within SMc00924at 859.015 kb on + strand, within SMc00924at 859.015 kb on + strand, within SMc00924at 859.016 kb on - strand, within SMc00924at 859.016 kb on - strand, within SMc00924at 859.016 kb on - strand, within SMc00924at 859.073 kb on - strand, within SMc00924at 859.219 kb on - strand, within SMc00924at 859.231 kb on + strand, within SMc00924at 859.231 kb on + strand, within SMc00924at 859.232 kb on - strand, within SMc00924at 859.232 kb on - strand, within SMc00924at 859.312 kb on + strand, within SMc00924at 859.354 kb on - strandat 859.354 kb on - strandat 859.354 kb on - strandat 859.354 kb on - strandat 859.402 kb on + strandat 859.586 kb on - strandat 859.603 kb on + strandat 859.603 kb on + strandat 859.604 kb on - strandat 859.746 kb on + strand, within SMc00923at 859.756 kb on - strand, within SMc00923at 859.987 kb on + strand, within SMc00923at 859.988 kb on - strand, within SMc00923at 860.052 kb on + strand, within SMc00923at 860.053 kb on - strand, within SMc00923at 860.377 kb on + strandat 860.433 kb on + strandat 860.434 kb on - strandat 860.436 kb on + strandat 860.436 kb on + strandat 860.437 kb on - strandat 860.437 kb on - strandat 860.437 kb on - strandat 860.438 kb on + strandat 860.438 kb on + strandat 860.439 kb on - strandat 860.439 kb on - strandat 860.439 kb on - strandat 860.439 kb on - strandat 860.506 kb on + strandat 860.506 kb on + strandat 860.507 kb on - strandat 860.507 kb on - strandat 860.507 kb on - strandat 860.507 kb on - strandat 860.507 kb on - strandat 860.646 kb on + strand, within SMc00922at 860.646 kb on + strand, within SMc00922at 860.647 kb on - strand, within SMc00922at 860.649 kb on + strand, within SMc00922at 860.649 kb on + strand, within SMc00922at 860.650 kb on - strand, within SMc00922at 860.689 kb on + strand, within SMc00922at 860.690 kb on - strand, within SMc00922at 860.742 kb on + strand, within SMc00922at 860.742 kb on + strand, within SMc00922at 860.772 kb on + strand, within SMc00922at 860.772 kb on + strand, within SMc00922at 860.772 kb on + strandat 860.773 kb on - strand, within SMc00922at 860.773 kb on - strand, within SMc00922at 860.773 kb on - strand, within SMc00922at 860.958 kb on + strand, within SMc00922at 861.069 kb on + strand, within SMc00922at 861.111 kb on + strand, within SMc00922at 861.112 kb on - strand, within SMc00922at 861.255 kb on + strand, within SMc00922at 861.255 kb on + strand, within SMc00922

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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858,688 + -0.7
858,782 - SMc00924 0.18 +0.4
858,795 + SMc00924 0.20 +0.0
858,795 + SMc00924 0.20 -1.4
858,796 - SMc00924 0.20 -0.4
858,796 - SMc00924 0.20 +0.2
858,799 + SMc00924 0.20 +0.3
858,799 + SMc00924 0.20 +0.4
858,799 + SMc00924 0.20 +0.0
858,799 + SMc00924 0.20 -0.6
858,799 + SMc00924 0.20 +0.8
858,799 + SMc00924 0.20 +0.9
858,800 - SMc00924 0.21 +0.0
858,800 - SMc00924 0.21 +0.6
858,800 - SMc00924 0.21 +0.1
858,800 - SMc00924 0.21 -0.2
858,856 + SMc00924 0.28 -0.7
858,856 + SMc00924 0.28 +0.0
859,015 + SMc00924 0.50 -0.2
859,015 + SMc00924 0.50 -1.2
859,016 - SMc00924 0.50 +0.1
859,016 - SMc00924 0.50 +0.8
859,016 - SMc00924 0.50 +0.3
859,073 - SMc00924 0.57 -0.9
859,219 - SMc00924 0.77 +0.9
859,231 + SMc00924 0.79 +0.3
859,231 + SMc00924 0.79 +0.9
859,232 - SMc00924 0.79 -2.4
859,232 - SMc00924 0.79 +1.1
859,312 + SMc00924 0.90 -0.8
859,354 - +0.3
859,354 - +0.0
859,354 - +0.5
859,354 - +0.1
859,402 + +0.0
859,586 - +0.3
859,603 + -0.3
859,603 + +1.4
859,604 - +0.3
859,746 + SMc00923 0.11 -0.2
859,756 - SMc00923 0.13 -0.0
859,987 + SMc00923 0.49 +0.1
859,988 - SMc00923 0.49 -0.1
860,052 + SMc00923 0.59 +1.1
860,053 - SMc00923 0.60 +0.2
860,377 + +0.3
860,433 + +1.3
860,434 - -2.3
860,436 + -1.0
860,436 + +0.3
860,437 - +0.8
860,437 - -0.1
860,437 - +1.9
860,438 + +0.8
860,438 + -0.6
860,439 - -0.3
860,439 - -1.1
860,439 - -0.3
860,439 - -1.0
860,506 + +0.8
860,506 + +0.5
860,507 - -0.9
860,507 - -0.0
860,507 - -2.4
860,507 - +1.0
860,507 - +2.3
860,646 + SMc00922 0.18 +0.5
860,646 + SMc00922 0.18 +1.2
860,647 - SMc00922 0.18 -1.2
860,649 + SMc00922 0.18 -2.0
860,649 + SMc00922 0.18 +0.3
860,650 - SMc00922 0.18 -0.4
860,689 + SMc00922 0.21 -0.0
860,690 - SMc00922 0.21 -0.1
860,742 + SMc00922 0.25 +0.5
860,742 + SMc00922 0.25 -0.3
860,772 + SMc00922 0.27 -2.7
860,772 + SMc00922 0.27 -0.1
860,772 + +1.0
860,773 - SMc00922 0.27 -0.4
860,773 - SMc00922 0.27 -0.7
860,773 - SMc00922 0.27 -0.1
860,958 + SMc00922 0.39 +0.9
861,069 + SMc00922 0.47 -2.0
861,111 + SMc00922 0.50 -0.1
861,112 - SMc00922 0.50 -0.1
861,255 + SMc00922 0.60 -0.5
861,255 + SMc00922 0.60 +1.4

Or see this region's nucleotide sequence