Strain Fitness in Sinorhizobium meliloti 1021 around SMc00080

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00079 and SMc00080 are separated by 184 nucleotidesSMc00080 and SMc00021 are separated by 169 nucleotides SMc00079: SMc00079 - hypothetical protein, at 1,012,771 to 1,013,466 SMc00079 SMc00080: SMc00080 - hypothetical protein, at 1,013,651 to 1,014,334 SMc00080 SMc00021: SMc00021 - adenine DNA methyltransferase, at 1,014,504 to 1,015,634 SMc00021 Position (kb) 1013 1014 1015Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1012.688 kb on + strandat 1012.689 kb on - strandat 1012.689 kb on - strandat 1012.773 kb on - strandat 1013.072 kb on + strand, within SMc00079at 1013.072 kb on + strand, within SMc00079at 1013.072 kb on + strand, within SMc00079at 1013.073 kb on - strand, within SMc00079at 1013.467 kb on - strandat 1013.546 kb on - strandat 1013.547 kb on + strandat 1013.547 kb on + strandat 1013.547 kb on + strandat 1013.547 kb on + strandat 1013.548 kb on - strandat 1013.637 kb on - strandat 1013.995 kb on - strand, within SMc00080at 1013.995 kb on - strand, within SMc00080at 1014.120 kb on + strand, within SMc00080at 1014.314 kb on + strandat 1014.314 kb on + strandat 1014.315 kb on - strandat 1014.315 kb on - strandat 1014.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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1,012,688 + +0.2
1,012,689 - -0.1
1,012,689 - -0.5
1,012,773 - -0.8
1,013,072 + SMc00079 0.43 +0.2
1,013,072 + SMc00079 0.43 +0.3
1,013,072 + SMc00079 0.43 +0.6
1,013,073 - SMc00079 0.43 +0.0
1,013,467 - +0.1
1,013,546 - +0.7
1,013,547 + -0.3
1,013,547 + +1.0
1,013,547 + -0.5
1,013,547 + +0.9
1,013,548 - -0.7
1,013,637 - +0.7
1,013,995 - SMc00080 0.50 +0.7
1,013,995 - SMc00080 0.50 -3.2
1,014,120 + SMc00080 0.69 -1.1
1,014,314 + -2.0
1,014,314 + +2.0
1,014,315 - +0.0
1,014,315 - -0.6
1,014,315 - +0.1

Or see this region's nucleotide sequence