Strain Fitness in Sinorhizobium meliloti 1021 around SMa1808

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1803 and SMa1808 are separated by 745 nucleotidesSMa1808 and SMa1809 are separated by 17 nucleotidesSMa1809 and SMa1811 are separated by 85 nucleotides SMa1803: SMa1803 - TRm2011-2a transposase, at 1,024,493 to 1,024,900 SMa1803 SMa1808: SMa1808 - hypothetical protein, at 1,025,646 to 1,026,050 SMa1808 SMa1809: SMa1809 - Non-heme haloperoxidase, at 1,026,068 to 1,026,898 SMa1809 SMa1811: SMa1811 - hypothetical protein, at 1,026,984 to 1,027,958 SMa1811 Position (kb) 1025 1026 1027Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1024.978 kb on + strandat 1025.339 kb on - strandat 1025.339 kb on - strandat 1025.386 kb on - strandat 1025.386 kb on - strandat 1025.398 kb on + strandat 1025.505 kb on + strandat 1025.604 kb on + strandat 1025.610 kb on + strandat 1025.611 kb on - strandat 1025.611 kb on - strandat 1025.647 kb on + strandat 1025.648 kb on - strandat 1025.648 kb on - strandat 1025.651 kb on + strandat 1025.651 kb on + strandat 1025.652 kb on - strandat 1025.652 kb on - strandat 1025.652 kb on - strandat 1025.652 kb on - strandat 1025.708 kb on + strand, within SMa1808at 1025.709 kb on - strand, within SMa1808at 1025.773 kb on + strand, within SMa1808at 1025.774 kb on - strand, within SMa1808at 1025.826 kb on + strand, within SMa1808at 1025.827 kb on - strand, within SMa1808at 1025.841 kb on - strand, within SMa1808at 1026.070 kb on - strandat 1026.122 kb on + strandat 1026.122 kb on + strandat 1026.399 kb on + strand, within SMa1809at 1026.400 kb on - strand, within SMa1809at 1026.400 kb on - strand, within SMa1809at 1026.582 kb on + strand, within SMa1809at 1026.675 kb on + strand, within SMa1809at 1026.853 kb on - strandat 1026.929 kb on + strandat 1027.000 kb on + strandat 1027.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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1,024,978 + -1.8
1,025,339 - -0.7
1,025,339 - -2.3
1,025,386 - -0.8
1,025,386 - -1.9
1,025,398 + +0.2
1,025,505 + +3.5
1,025,604 + -0.7
1,025,610 + -0.2
1,025,611 - +0.1
1,025,611 - -0.2
1,025,647 + -1.4
1,025,648 - +0.2
1,025,648 - +1.0
1,025,651 + -2.0
1,025,651 + -0.8
1,025,652 - -0.8
1,025,652 - -0.1
1,025,652 - -2.1
1,025,652 - +0.0
1,025,708 + SMa1808 0.15 +0.3
1,025,709 - SMa1808 0.16 +0.4
1,025,773 + SMa1808 0.31 +0.7
1,025,774 - SMa1808 0.32 +3.3
1,025,826 + SMa1808 0.44 -0.4
1,025,827 - SMa1808 0.45 +0.8
1,025,841 - SMa1808 0.48 +0.5
1,026,070 - -1.1
1,026,122 + -0.2
1,026,122 + -0.4
1,026,399 + SMa1809 0.40 -0.7
1,026,400 - SMa1809 0.40 +0.0
1,026,400 - SMa1809 0.40 +0.0
1,026,582 + SMa1809 0.62 -1.6
1,026,675 + SMa1809 0.73 +1.1
1,026,853 - +0.5
1,026,929 + -0.6
1,027,000 + +1.1
1,027,001 - +1.1

Or see this region's nucleotide sequence