Experiment: Thallium(I) acetate 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1283 and SMa1285 are separated by 365 nucleotides SMa1285 and SMa1288 overlap by 4 nucleotides SMa1288 and SMa1289 are separated by 177 nucleotides SMa1289 and SMa1291 overlap by 10 nucleotides
SMa1283: SMa1283 - NnrU family protein, at 700,220 to 700,906
SMa1283
SMa1285: SMa1285 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 701,272 to 701,874
SMa1285
SMa1288: SMa1288 - Carboxylase, at 701,871 to 703,322
SMa1288
SMa1289: SMa1289 - hypothetical protein, at 703,500 to 704,006
SMa1289
SMa1291: SMa1291 - Protease, at 703,997 to 704,974
SMa1291
Position (kb) 701
702
703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 700.904 kb on + strand at 700.904 kb on + strand at 700.904 kb on + strand at 700.905 kb on - strand at 700.905 kb on - strand at 701.104 kb on + strand at 701.273 kb on + strand at 701.273 kb on + strand at 701.274 kb on - strand at 701.274 kb on - strand at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.678 kb on + strand, within SMa1285 at 702.046 kb on + strand, within SMa1288 at 702.047 kb on - strand, within SMa1288 at 702.047 kb on - strand, within SMa1288 at 702.165 kb on + strand, within SMa1288 at 702.173 kb on + strand, within SMa1288 at 702.174 kb on - strand, within SMa1288 at 702.174 kb on - strand, within SMa1288 at 702.216 kb on - strand, within SMa1288 at 702.268 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.293 kb on - strand, within SMa1288 at 702.294 kb on + strand, within SMa1288 at 702.294 kb on + strand, within SMa1288 at 702.295 kb on - strand, within SMa1288 at 702.295 kb on - strand, within SMa1288 at 702.406 kb on + strand, within SMa1288 at 702.406 kb on + strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.473 kb on - strand, within SMa1288 at 702.473 kb on - strand, within SMa1288 at 702.494 kb on - strand, within SMa1288 at 702.814 kb on + strand, within SMa1288 at 702.814 kb on + strand, within SMa1288 at 703.131 kb on + strand, within SMa1288 at 703.131 kb on + strand at 703.132 kb on - strand, within SMa1288 at 703.132 kb on - strand, within SMa1288 at 703.179 kb on + strand at 703.180 kb on - strand at 703.375 kb on + strand at 703.375 kb on + strand at 703.442 kb on + strand at 703.467 kb on - strand at 703.467 kb on - strand at 703.631 kb on + strand, within SMa1289 at 703.632 kb on - strand, within SMa1289 at 703.632 kb on - strand, within SMa1289 at 703.771 kb on + strand, within SMa1289 at 703.771 kb on + strand, within SMa1289 at 703.846 kb on + strand, within SMa1289 at 703.846 kb on + strand, within SMa1289 at 703.846 kb on + strand, within SMa1289 at 703.847 kb on - strand, within SMa1289 at 703.847 kb on - strand, within SMa1289 at 704.069 kb on + strand at 704.147 kb on - strand, within SMa1291 at 704.154 kb on - strand, within SMa1291 at 704.229 kb on - strand, within SMa1291 at 704.293 kb on + strand, within SMa1291 at 704.294 kb on - strand, within SMa1291 at 704.316 kb on - strand, within SMa1291
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml remove 700,904 + -1.0 700,904 + +0.6 700,904 + +0.3 700,905 - +0.0 700,905 - +0.6 701,104 + +0.3 701,273 + -0.6 701,273 + -0.2 701,274 - -0.5 701,274 - +0.0 701,408 + SMa1285 0.23 -0.8 701,408 + SMa1285 0.23 +2.1 701,408 + SMa1285 0.23 +0.2 701,408 + SMa1285 0.23 +0.1 701,408 + SMa1285 0.23 +0.7 701,678 + SMa1285 0.67 +0.9 702,046 + SMa1288 0.12 -0.5 702,047 - SMa1288 0.12 +0.6 702,047 - SMa1288 0.12 +0.4 702,165 + SMa1288 0.20 -0.0 702,173 + SMa1288 0.21 +1.9 702,174 - SMa1288 0.21 +0.2 702,174 - SMa1288 0.21 -0.5 702,216 - SMa1288 0.24 -0.5 702,268 + SMa1288 0.27 -1.2 702,292 + SMa1288 0.29 -0.8 702,292 + SMa1288 0.29 +2.4 702,292 + SMa1288 0.29 +1.3 702,292 + SMa1288 0.29 -0.8 702,293 - SMa1288 0.29 +0.8 702,294 + SMa1288 0.29 -0.5 702,294 + SMa1288 0.29 -2.4 702,295 - SMa1288 0.29 +0.6 702,295 - SMa1288 0.29 +0.8 702,406 + SMa1288 0.37 -2.9 702,406 + SMa1288 0.37 +0.2 702,407 - SMa1288 0.37 +0.6 702,407 - SMa1288 0.37 -0.0 702,407 - SMa1288 0.37 +0.9 702,407 - SMa1288 0.37 +1.3 702,472 + SMa1288 0.41 -0.5 702,472 + SMa1288 0.41 +1.6 702,472 + SMa1288 0.41 -0.6 702,472 + SMa1288 0.41 -0.2 702,472 + SMa1288 0.41 -1.1 702,472 + SMa1288 0.41 +0.0 702,473 - SMa1288 0.41 +0.2 702,473 - SMa1288 0.41 +0.4 702,494 - SMa1288 0.43 +1.8 702,814 + SMa1288 0.65 +0.1 702,814 + SMa1288 0.65 +0.7 703,131 + SMa1288 0.87 -0.9 703,131 + +4.1 703,132 - SMa1288 0.87 -0.6 703,132 - SMa1288 0.87 +0.4 703,179 + +0.5 703,180 - +0.1 703,375 + -0.9 703,375 + -0.5 703,442 + -1.5 703,467 - +1.8 703,467 - -3.5 703,631 + SMa1289 0.26 -0.4 703,632 - SMa1289 0.26 -1.9 703,632 - SMa1289 0.26 +0.2 703,771 + SMa1289 0.53 +0.8 703,771 + SMa1289 0.53 +0.2 703,846 + SMa1289 0.68 -0.8 703,846 + SMa1289 0.68 -0.5 703,846 + SMa1289 0.68 +0.3 703,847 - SMa1289 0.68 -0.6 703,847 - SMa1289 0.68 -0.0 704,069 + +0.2 704,147 - SMa1291 0.15 -0.8 704,154 - SMa1291 0.16 +0.3 704,229 - SMa1291 0.24 +0.7 704,293 + SMa1291 0.30 -1.2 704,294 - SMa1291 0.30 +0.4 704,316 - SMa1291 0.33 -0.9
Or see this region's nucleotide sequence