Strain Fitness in Sinorhizobium meliloti 1021 around SMa0077

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0072 and SMa0074 are separated by 7 nucleotidesSMa0074 and SMa0077 overlap by 1 nucleotidesSMa0077 and SMa0078 are separated by 241 nucleotides SMa0072: SMa0072 - ABC transporter ATP-binding protein, at 38,333 to 39,064 SMa0072 SMa0074: SMa0074 - 3-ketoacyl-ACP reductase, at 39,072 to 39,830 SMa0074 SMa0077: SMa0077 - hypothetical protein, at 39,830 to 40,717 SMa0077 SMa0078: SMa0078 - LacI family transcriptional regulator, at 40,959 to 41,981 SMa0078 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 39.255 kb on + strand, within SMa0074at 39.255 kb on + strand, within SMa0074at 39.256 kb on - strand, within SMa0074at 39.276 kb on - strand, within SMa0074at 39.280 kb on + strand, within SMa0074at 39.281 kb on - strand, within SMa0074at 39.281 kb on - strand, within SMa0074at 39.305 kb on + strand, within SMa0074at 39.400 kb on - strand, within SMa0074at 39.534 kb on + strand, within SMa0074at 39.534 kb on + strand, within SMa0074at 39.534 kb on + strand, within SMa0074at 39.535 kb on - strand, within SMa0074at 39.535 kb on - strand, within SMa0074at 39.543 kb on + strand, within SMa0074at 39.543 kb on + strand, within SMa0074at 39.543 kb on + strand, within SMa0074at 39.544 kb on - strand, within SMa0074at 39.544 kb on - strand, within SMa0074at 39.547 kb on + strand, within SMa0074at 39.547 kb on + strand, within SMa0074at 39.548 kb on - strand, within SMa0074at 39.548 kb on - strand, within SMa0074at 39.690 kb on + strand, within SMa0074at 39.690 kb on + strand, within SMa0074at 39.691 kb on - strand, within SMa0074at 39.691 kb on - strand, within SMa0074at 39.691 kb on - strand, within SMa0074at 39.691 kb on - strand, within SMa0074at 40.083 kb on + strand, within SMa0077at 40.083 kb on + strand, within SMa0077at 40.084 kb on - strand, within SMa0077at 40.084 kb on - strand, within SMa0077at 40.084 kb on - strand, within SMa0077at 40.084 kb on - strand, within SMa0077at 40.084 kb on - strand, within SMa0077at 40.209 kb on - strand, within SMa0077at 40.216 kb on - strand, within SMa0077at 40.392 kb on + strand, within SMa0077at 40.547 kb on + strand, within SMa0077at 40.547 kb on + strand, within SMa0077at 40.620 kb on + strand, within SMa0077at 40.847 kb on + strandat 40.921 kb on + strandat 40.921 kb on + strandat 40.922 kb on - strandat 40.922 kb on - strandat 40.924 kb on - strandat 40.924 kb on - strandat 41.118 kb on + strand, within SMa0078at 41.119 kb on - strand, within SMa0078at 41.119 kb on - strand, within SMa0078at 41.119 kb on - strand, within SMa0078at 41.119 kb on - strand, within SMa0078at 41.124 kb on + strand, within SMa0078at 41.124 kb on + strand, within SMa0078at 41.124 kb on + strand, within SMa0078at 41.124 kb on + strand, within SMa0078at 41.125 kb on - strand, within SMa0078at 41.125 kb on - strand, within SMa0078at 41.274 kb on - strand, within SMa0078at 41.389 kb on + strand, within SMa0078at 41.390 kb on - strand, within SMa0078at 41.419 kb on + strand, within SMa0078at 41.448 kb on + strand, within SMa0078at 41.448 kb on + strand, within SMa0078at 41.448 kb on + strand, within SMa0078at 41.448 kb on + strand, within SMa0078at 41.448 kb on + strand, within SMa0078at 41.449 kb on - strand, within SMa0078at 41.463 kb on + strand, within SMa0078at 41.464 kb on - strand, within SMa0078at 41.685 kb on - strand, within SMa0078at 41.685 kb on - strand, within SMa0078

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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39,255 + SMa0074 0.24 -1.0
39,255 + SMa0074 0.24 -1.0
39,256 - SMa0074 0.24 -0.5
39,276 - SMa0074 0.27 -0.5
39,280 + SMa0074 0.27 -0.7
39,281 - SMa0074 0.28 +0.1
39,281 - SMa0074 0.28 +0.2
39,305 + SMa0074 0.31 -1.7
39,400 - SMa0074 0.43 -0.8
39,534 + SMa0074 0.61 -0.5
39,534 + SMa0074 0.61 +1.0
39,534 + SMa0074 0.61 +1.8
39,535 - SMa0074 0.61 +0.7
39,535 - SMa0074 0.61 +0.1
39,543 + SMa0074 0.62 +0.3
39,543 + SMa0074 0.62 +0.5
39,543 + SMa0074 0.62 +0.1
39,544 - SMa0074 0.62 -1.0
39,544 - SMa0074 0.62 -0.5
39,547 + SMa0074 0.63 +0.2
39,547 + SMa0074 0.63 -3.0
39,548 - SMa0074 0.63 -0.2
39,548 - SMa0074 0.63 +0.6
39,690 + SMa0074 0.81 +0.4
39,690 + SMa0074 0.81 -0.4
39,691 - SMa0074 0.82 +0.2
39,691 - SMa0074 0.82 -2.1
39,691 - SMa0074 0.82 -0.6
39,691 - SMa0074 0.82 -1.7
40,083 + SMa0077 0.28 +1.1
40,083 + SMa0077 0.28 +0.4
40,084 - SMa0077 0.29 -0.8
40,084 - SMa0077 0.29 +0.8
40,084 - SMa0077 0.29 -1.4
40,084 - SMa0077 0.29 -0.9
40,084 - SMa0077 0.29 +0.1
40,209 - SMa0077 0.43 +0.5
40,216 - SMa0077 0.43 -1.2
40,392 + SMa0077 0.63 +0.1
40,547 + SMa0077 0.81 +0.3
40,547 + SMa0077 0.81 +0.0
40,620 + SMa0077 0.89 +1.7
40,847 + +0.2
40,921 + -0.8
40,921 + -0.5
40,922 - +1.6
40,922 - -2.8
40,924 - -1.0
40,924 - +0.1
41,118 + SMa0078 0.16 -0.5
41,119 - SMa0078 0.16 -1.1
41,119 - SMa0078 0.16 -0.5
41,119 - SMa0078 0.16 -0.5
41,119 - SMa0078 0.16 +0.0
41,124 + SMa0078 0.16 -0.1
41,124 + SMa0078 0.16 -0.3
41,124 + SMa0078 0.16 -1.1
41,124 + SMa0078 0.16 -0.2
41,125 - SMa0078 0.16 -0.9
41,125 - SMa0078 0.16 -0.9
41,274 - SMa0078 0.31 +0.4
41,389 + SMa0078 0.42 +1.4
41,390 - SMa0078 0.42 +0.0
41,419 + SMa0078 0.45 -0.5
41,448 + SMa0078 0.48 -1.4
41,448 + SMa0078 0.48 +1.3
41,448 + SMa0078 0.48 +1.2
41,448 + SMa0078 0.48 -0.4
41,448 + SMa0078 0.48 -0.3
41,449 - SMa0078 0.48 -2.0
41,463 + SMa0078 0.49 +0.3
41,464 - SMa0078 0.49 +1.5
41,685 - SMa0078 0.71 -0.5
41,685 - SMa0078 0.71 -1.5

Or see this region's nucleotide sequence