Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21535

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21534 and SM_b21535 are separated by 15 nucleotidesSM_b21535 and SM_b21536 are separated by 108 nucleotides SM_b21534: SM_b21534 - dehydrogenase, at 1,060,537 to 1,063,014 _b21534 SM_b21535: SM_b21535 - LysR family transcriptional regulator, at 1,063,030 to 1,063,899 _b21535 SM_b21536: SM_b21536 - hypothetical protein, at 1,064,008 to 1,065,678 _b21536 Position (kb) 1063 1064Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1062.098 kb on - strand, within SM_b21534at 1062.099 kb on + strand, within SM_b21534at 1062.314 kb on + strand, within SM_b21534at 1062.314 kb on + strand, within SM_b21534at 1062.315 kb on - strandat 1062.315 kb on - strand, within SM_b21534at 1062.392 kb on - strand, within SM_b21534at 1062.404 kb on - strand, within SM_b21534at 1062.421 kb on + strand, within SM_b21534at 1062.422 kb on - strand, within SM_b21534at 1062.422 kb on - strand, within SM_b21534at 1062.422 kb on - strand, within SM_b21534at 1062.422 kb on - strand, within SM_b21534at 1062.422 kb on - strand, within SM_b21534at 1062.509 kb on + strand, within SM_b21534at 1062.509 kb on + strand, within SM_b21534at 1062.510 kb on - strand, within SM_b21534at 1062.530 kb on - strand, within SM_b21534at 1062.532 kb on + strand, within SM_b21534at 1062.533 kb on - strand, within SM_b21534at 1062.955 kb on + strandat 1062.956 kb on - strandat 1062.956 kb on - strandat 1062.956 kb on - strandat 1063.198 kb on + strand, within SM_b21535at 1063.198 kb on + strand, within SM_b21535at 1063.372 kb on - strand, within SM_b21535at 1063.493 kb on + strand, within SM_b21535at 1063.493 kb on + strand, within SM_b21535at 1063.499 kb on + strand, within SM_b21535at 1063.499 kb on + strand, within SM_b21535at 1063.500 kb on - strand, within SM_b21535at 1063.500 kb on - strand, within SM_b21535at 1063.559 kb on + strand, within SM_b21535at 1063.559 kb on + strand, within SM_b21535at 1063.772 kb on + strand, within SM_b21535at 1063.772 kb on + strand, within SM_b21535at 1063.773 kb on - strand, within SM_b21535at 1063.773 kb on - strand, within SM_b21535at 1064.062 kb on + strandat 1064.062 kb on + strandat 1064.063 kb on - strandat 1064.063 kb on - strandat 1064.153 kb on - strandat 1064.243 kb on - strand, within SM_b21536at 1064.248 kb on - strand, within SM_b21536at 1064.371 kb on + strand, within SM_b21536at 1064.372 kb on - strand, within SM_b21536at 1064.513 kb on - strand, within SM_b21536

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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1,062,098 - SM_b21534 0.63 +2.2
1,062,099 + SM_b21534 0.63 +0.3
1,062,314 + SM_b21534 0.72 -0.0
1,062,314 + SM_b21534 0.72 +0.8
1,062,315 - +3.1
1,062,315 - SM_b21534 0.72 -0.5
1,062,392 - SM_b21534 0.75 -0.5
1,062,404 - SM_b21534 0.75 -0.3
1,062,421 + SM_b21534 0.76 -0.4
1,062,422 - SM_b21534 0.76 +1.2
1,062,422 - SM_b21534 0.76 -0.4
1,062,422 - SM_b21534 0.76 -0.3
1,062,422 - SM_b21534 0.76 +0.0
1,062,422 - SM_b21534 0.76 -1.2
1,062,509 + SM_b21534 0.80 +0.0
1,062,509 + SM_b21534 0.80 +0.5
1,062,510 - SM_b21534 0.80 +0.2
1,062,530 - SM_b21534 0.80 -0.2
1,062,532 + SM_b21534 0.81 -2.5
1,062,533 - SM_b21534 0.81 +0.0
1,062,955 + +2.7
1,062,956 - -2.2
1,062,956 - -0.2
1,062,956 - -1.4
1,063,198 + SM_b21535 0.19 -0.2
1,063,198 + SM_b21535 0.19 +1.2
1,063,372 - SM_b21535 0.39 -0.9
1,063,493 + SM_b21535 0.53 -1.7
1,063,493 + SM_b21535 0.53 -1.4
1,063,499 + SM_b21535 0.54 +0.1
1,063,499 + SM_b21535 0.54 -0.4
1,063,500 - SM_b21535 0.54 +0.1
1,063,500 - SM_b21535 0.54 +1.5
1,063,559 + SM_b21535 0.61 +0.3
1,063,559 + SM_b21535 0.61 -0.2
1,063,772 + SM_b21535 0.85 +1.2
1,063,772 + SM_b21535 0.85 -0.1
1,063,773 - SM_b21535 0.85 +0.4
1,063,773 - SM_b21535 0.85 +0.6
1,064,062 + +1.6
1,064,062 + +0.2
1,064,063 - +0.9
1,064,063 - +0.1
1,064,153 - +0.2
1,064,243 - SM_b21536 0.14 -0.2
1,064,248 - SM_b21536 0.14 +1.0
1,064,371 + SM_b21536 0.22 -0.6
1,064,372 - SM_b21536 0.22 -0.9
1,064,513 - SM_b21536 0.30 +0.3

Or see this region's nucleotide sequence