Experiment: Thallium(I) acetate 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21506 and SM_b21507 are separated by 202 nucleotides SM_b21507 and SM_b21508 are separated by 40 nucleotides SM_b21508 and SM_b21509 are separated by 173 nucleotides SM_b21509 and SM_b21510 overlap by 269 nucleotides SM_b21510 and SM_b21511 are separated by 13 nucleotides SM_b21511 and SM_b21512 are separated by 59 nucleotides
SM_b21506: SM_b21506 - cell surface polysaccharides export protein, at 1,431,320 to 1,432,936
_b21506
SM_b21507: SM_b21507 - amino acid transporter, exporter protein, at 1,433,139 to 1,433,795
_b21507
SM_b21508: SM_b21508 - dihydrodipicolinate synthetase, at 1,433,836 to 1,434,750
_b21508
SM_b21509: SM_b21509 - plasmid stability protein, at 1,434,924 to 1,435,436
_b21509
SM_b21510: SM_b21510 - plasmid stability protein, at 1,435,168 to 1,435,293
_b21510
SM_b21511: SM_b21511 - plasmid stability protein, at 1,435,307 to 1,435,552
_b21511
SM_b21512: SM_b21512 - hypothetical protein, at 1,435,612 to 1,436,760
_b21512
Position (kb)
1433
1434
1435 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1432.901 kb on + strand at 1432.901 kb on + strand at 1432.902 kb on - strand at 1432.932 kb on + strand at 1432.933 kb on - strand at 1432.973 kb on + strand at 1432.974 kb on - strand at 1433.006 kb on - strand at 1433.006 kb on - strand at 1433.091 kb on + strand at 1433.092 kb on - strand at 1433.157 kb on + strand at 1433.158 kb on - strand at 1433.158 kb on - strand at 1433.158 kb on - strand at 1433.158 kb on - strand at 1433.158 kb on - strand at 1433.188 kb on - strand at 1433.273 kb on + strand, within SM_b21507 at 1433.306 kb on - strand, within SM_b21507 at 1433.359 kb on - strand, within SM_b21507 at 1433.359 kb on - strand, within SM_b21507 at 1433.397 kb on + strand, within SM_b21507 at 1433.398 kb on - strand, within SM_b21507 at 1433.429 kb on + strand, within SM_b21507 at 1433.624 kb on + strand, within SM_b21507 at 1433.752 kb on + strand at 1433.753 kb on - strand at 1433.753 kb on - strand at 1433.753 kb on - strand at 1433.822 kb on + strand at 1433.822 kb on + strand at 1433.830 kb on - strand at 1433.830 kb on - strand at 1433.887 kb on + strand at 1433.966 kb on + strand, within SM_b21508 at 1434.267 kb on + strand, within SM_b21508 at 1434.268 kb on - strand, within SM_b21508 at 1434.268 kb on - strand, within SM_b21508 at 1434.268 kb on - strand, within SM_b21508 at 1434.333 kb on + strand, within SM_b21508 at 1434.338 kb on + strand, within SM_b21508 at 1434.389 kb on + strand, within SM_b21508 at 1434.390 kb on - strand, within SM_b21508 at 1434.416 kb on + strand, within SM_b21508 at 1434.417 kb on - strand, within SM_b21508 at 1434.422 kb on - strand, within SM_b21508 at 1434.593 kb on + strand, within SM_b21508 at 1434.594 kb on - strand, within SM_b21508 at 1434.792 kb on - strand at 1435.126 kb on + strand, within SM_b21509 at 1435.230 kb on - strand at 1435.265 kb on + strand at 1435.266 kb on - strand at 1435.266 kb on - strand at 1435.266 kb on - strand at 1435.301 kb on + strand, within SM_b21509 at 1435.390 kb on + strand at 1435.391 kb on - strand at 1435.391 kb on - strand at 1435.395 kb on + strand at 1435.396 kb on - strand at 1435.396 kb on - strand at 1435.434 kb on + strand at 1435.526 kb on + strand, within SM_b21511 at 1435.561 kb on + strand at 1435.561 kb on + strand at 1435.562 kb on - strand at 1435.565 kb on + strand at 1435.565 kb on + strand at 1435.566 kb on - strand at 1435.566 kb on - strand at 1435.602 kb on + strand at 1435.602 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml remove 1,432,901 + +2.4 1,432,901 + -1.4 1,432,902 - +1.7 1,432,932 + -0.8 1,432,933 - +1.1 1,432,973 + +1.1 1,432,974 - +0.3 1,433,006 - -0.9 1,433,006 - -0.9 1,433,091 + -1.4 1,433,092 - -3.4 1,433,157 + +0.3 1,433,158 - -0.3 1,433,158 - +1.1 1,433,158 - -0.4 1,433,158 - -0.0 1,433,158 - +1.1 1,433,188 - +2.1 1,433,273 + SM_b21507 0.20 -1.9 1,433,306 - SM_b21507 0.25 +0.0 1,433,359 - SM_b21507 0.33 -0.6 1,433,359 - SM_b21507 0.33 +0.0 1,433,397 + SM_b21507 0.39 -0.7 1,433,398 - SM_b21507 0.39 +0.2 1,433,429 + SM_b21507 0.44 +0.2 1,433,624 + SM_b21507 0.74 -2.0 1,433,752 + -1.7 1,433,753 - +0.3 1,433,753 - -2.3 1,433,753 - +1.1 1,433,822 + +0.0 1,433,822 + +0.9 1,433,830 - +0.8 1,433,830 - -1.2 1,433,887 + -1.8 1,433,966 + SM_b21508 0.14 +0.6 1,434,267 + SM_b21508 0.47 -0.3 1,434,268 - SM_b21508 0.47 +0.5 1,434,268 - SM_b21508 0.47 +0.6 1,434,268 - SM_b21508 0.47 -0.2 1,434,333 + SM_b21508 0.54 +0.2 1,434,338 + SM_b21508 0.55 +0.6 1,434,389 + SM_b21508 0.60 -1.9 1,434,390 - SM_b21508 0.61 -0.9 1,434,416 + SM_b21508 0.63 -0.1 1,434,417 - SM_b21508 0.63 -4.0 1,434,422 - SM_b21508 0.64 -0.9 1,434,593 + SM_b21508 0.83 -0.6 1,434,594 - SM_b21508 0.83 -0.9 1,434,792 - +0.6 1,435,126 + SM_b21509 0.39 -2.2 1,435,230 - -0.5 1,435,265 + -0.3 1,435,266 - -1.2 1,435,266 - -0.9 1,435,266 - -0.6 1,435,301 + SM_b21509 0.73 -0.3 1,435,390 + -1.9 1,435,391 - +1.3 1,435,391 - -0.6 1,435,395 + -1.4 1,435,396 - -0.8 1,435,396 - -1.4 1,435,434 + -0.2 1,435,526 + SM_b21511 0.89 -2.6 1,435,561 + -0.0 1,435,561 + +0.5 1,435,562 - +3.0 1,435,565 + +0.4 1,435,565 + -0.9 1,435,566 - -0.3 1,435,566 - +0.5 1,435,602 + -0.1 1,435,602 + -0.4 1,435,664 + +1.1 1,435,664 + +1.1 1,435,664 + -1.2 1,435,664 + -0.6 1,435,665 - +0.8 1,435,665 - -0.2 1,435,665 - -0.0 1,435,665 - -2.9 1,435,725 - -1.2
Or see this region's nucleotide sequence