Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21401

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21399 and SM_b21683 are separated by 35 nucleotidesSM_b21683 and SM_b21400 are separated by 85 nucleotidesSM_b21400 and SM_b21401 are separated by 48 nucleotidesSM_b21401 and SM_b21402 are separated by 548 nucleotides SM_b21399: SM_b21399 - hypothetical protein, at 1,330,868 to 1,331,272 _b21399 SM_b21683: SM_b21683 - hypothetical protein, at 1,331,308 to 1,331,499 _b21683 SM_b21400: SM_b21400 - hypothetical protein, at 1,331,585 to 1,331,821 _b21400 SM_b21401: SM_b21401 - hypothetical protein, at 1,331,870 to 1,332,220 _b21401 SM_b21402: SM_b21402 - hypothetical protein, at 1,332,769 to 1,333,932 _b21402 Position (kb) 1331 1332 1333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1330.937 kb on + strand, within SM_b21399at 1331.002 kb on + strand, within SM_b21399at 1331.002 kb on + strand, within SM_b21399at 1331.002 kb on + strand, within SM_b21399at 1331.002 kb on + strand, within SM_b21399at 1331.003 kb on - strand, within SM_b21399at 1331.003 kb on - strand, within SM_b21399at 1331.003 kb on - strand, within SM_b21399at 1331.083 kb on - strand, within SM_b21399at 1331.083 kb on - strand, within SM_b21399at 1331.164 kb on - strand, within SM_b21399at 1331.167 kb on + strand, within SM_b21399at 1331.302 kb on + strandat 1331.302 kb on + strandat 1331.309 kb on + strandat 1331.324 kb on + strandat 1331.324 kb on + strandat 1331.324 kb on + strandat 1331.325 kb on - strandat 1331.336 kb on + strand, within SM_b21683at 1331.337 kb on + strand, within SM_b21683at 1331.337 kb on + strand, within SM_b21683at 1331.338 kb on - strand, within SM_b21683at 1331.338 kb on - strand, within SM_b21683at 1331.338 kb on - strand, within SM_b21683at 1331.411 kb on + strand, within SM_b21683at 1331.411 kb on + strand, within SM_b21683at 1331.511 kb on - strandat 1331.594 kb on - strandat 1331.685 kb on + strand, within SM_b21400at 1331.686 kb on - strand, within SM_b21400at 1331.686 kb on - strand, within SM_b21400at 1331.828 kb on + strandat 1331.828 kb on + strandat 1331.828 kb on + strandat 1331.829 kb on - strandat 1331.829 kb on - strandat 1331.881 kb on + strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1332.000 kb on + strand, within SM_b21401at 1332.000 kb on + strand, within SM_b21401at 1332.001 kb on - strand, within SM_b21401at 1332.005 kb on + strand, within SM_b21401at 1332.006 kb on - strand, within SM_b21401at 1332.041 kb on - strand, within SM_b21401at 1332.172 kb on + strand, within SM_b21401at 1332.172 kb on + strand, within SM_b21401at 1332.217 kb on - strandat 1332.217 kb on - strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.283 kb on + strandat 1332.284 kb on - strandat 1332.352 kb on + strandat 1332.353 kb on - strandat 1332.455 kb on - strandat 1332.501 kb on + strandat 1332.502 kb on - strandat 1332.507 kb on + strandat 1332.549 kb on - strandat 1332.663 kb on + strandat 1332.664 kb on - strandat 1332.742 kb on - strandat 1332.757 kb on + strandat 1332.786 kb on + strandat 1332.854 kb on - strandat 1332.854 kb on - strandat 1332.854 kb on - strandat 1332.907 kb on + strand, within SM_b21402at 1332.907 kb on + strand, within SM_b21402at 1332.907 kb on + strand, within SM_b21402at 1332.907 kb on + strand, within SM_b21402at 1332.907 kb on + strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.909 kb on + strand, within SM_b21402at 1332.910 kb on - strand, within SM_b21402at 1332.910 kb on - strand, within SM_b21402at 1332.934 kb on + strand, within SM_b21402at 1332.934 kb on + strand, within SM_b21402at 1332.935 kb on - strand, within SM_b21402at 1332.935 kb on - strand, within SM_b21402at 1333.123 kb on + strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.152 kb on + strand, within SM_b21402at 1333.153 kb on - strand, within SM_b21402

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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1,330,937 + SM_b21399 0.17 -1.0
1,331,002 + SM_b21399 0.33 +0.4
1,331,002 + SM_b21399 0.33 +0.3
1,331,002 + SM_b21399 0.33 +0.2
1,331,002 + SM_b21399 0.33 +0.3
1,331,003 - SM_b21399 0.33 -0.1
1,331,003 - SM_b21399 0.33 +0.5
1,331,003 - SM_b21399 0.33 +0.7
1,331,083 - SM_b21399 0.53 +0.1
1,331,083 - SM_b21399 0.53 -1.7
1,331,164 - SM_b21399 0.73 -2.1
1,331,167 + SM_b21399 0.74 +0.6
1,331,302 + -1.8
1,331,302 + +0.1
1,331,309 + -0.1
1,331,324 + +2.3
1,331,324 + -0.6
1,331,324 + -3.4
1,331,325 - +3.9
1,331,336 + SM_b21683 0.15 +0.6
1,331,337 + SM_b21683 0.15 -0.1
1,331,337 + SM_b21683 0.15 +0.2
1,331,338 - SM_b21683 0.16 -0.2
1,331,338 - SM_b21683 0.16 +0.5
1,331,338 - SM_b21683 0.16 -0.8
1,331,411 + SM_b21683 0.54 +0.5
1,331,411 + SM_b21683 0.54 -1.2
1,331,511 - -1.4
1,331,594 - -0.1
1,331,685 + SM_b21400 0.42 -0.6
1,331,686 - SM_b21400 0.43 +0.5
1,331,686 - SM_b21400 0.43 -0.6
1,331,828 + -1.5
1,331,828 + -0.9
1,331,828 + -1.1
1,331,829 - +0.1
1,331,829 - -1.7
1,331,881 + -0.9
1,331,882 - -0.6
1,331,882 - -0.1
1,331,882 - -1.6
1,331,882 - +0.2
1,331,882 - -0.3
1,331,882 - -0.0
1,332,000 + SM_b21401 0.37 -0.1
1,332,000 + SM_b21401 0.37 -0.8
1,332,001 - SM_b21401 0.37 +0.5
1,332,005 + SM_b21401 0.38 -0.6
1,332,006 - SM_b21401 0.39 -1.2
1,332,041 - SM_b21401 0.49 -1.6
1,332,172 + SM_b21401 0.86 -0.3
1,332,172 + SM_b21401 0.86 -0.9
1,332,217 - -1.5
1,332,217 - -0.2
1,332,221 + -0.1
1,332,221 + +0.5
1,332,221 + -0.3
1,332,221 + +0.7
1,332,221 + -2.0
1,332,221 + +2.7
1,332,222 - -2.0
1,332,222 - +1.5
1,332,222 - -1.0
1,332,222 - +0.0
1,332,222 - -0.0
1,332,222 - -2.3
1,332,283 + +1.1
1,332,284 - -0.0
1,332,352 + +1.0
1,332,353 - -0.2
1,332,455 - -0.3
1,332,501 + -1.8
1,332,502 - +0.6
1,332,507 + +2.3
1,332,549 - +0.1
1,332,663 + +0.6
1,332,664 - -0.2
1,332,742 - +1.4
1,332,757 + +0.1
1,332,786 + -0.4
1,332,854 - +1.2
1,332,854 - -0.5
1,332,854 - +0.7
1,332,907 + SM_b21402 0.12 +0.9
1,332,907 + SM_b21402 0.12 -1.6
1,332,907 + SM_b21402 0.12 -0.0
1,332,907 + SM_b21402 0.12 -2.5
1,332,907 + SM_b21402 0.12 -0.3
1,332,908 - SM_b21402 0.12 +0.6
1,332,908 - SM_b21402 0.12 +0.9
1,332,908 - SM_b21402 0.12 -3.3
1,332,908 - SM_b21402 0.12 -0.2
1,332,908 - SM_b21402 0.12 -1.1
1,332,908 - SM_b21402 0.12 +0.6
1,332,908 - SM_b21402 0.12 +2.5
1,332,908 - SM_b21402 0.12 -0.6
1,332,909 + SM_b21402 0.12 +0.9
1,332,910 - SM_b21402 0.12 -1.6
1,332,910 - SM_b21402 0.12 -0.4
1,332,934 + SM_b21402 0.14 +0.0
1,332,934 + SM_b21402 0.14 +1.1
1,332,935 - SM_b21402 0.14 -0.0
1,332,935 - SM_b21402 0.14 +0.4
1,333,123 + SM_b21402 0.30 +0.2
1,333,124 - SM_b21402 0.30 +1.7
1,333,124 - SM_b21402 0.30 -0.2
1,333,124 - SM_b21402 0.30 +0.3
1,333,124 - SM_b21402 0.30 -0.3
1,333,124 - SM_b21402 0.30 +0.3
1,333,152 + SM_b21402 0.33 -0.3
1,333,153 - SM_b21402 0.33 -0.5

Or see this region's nucleotide sequence