Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21397

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21395 and SM_b21396 are separated by 55 nucleotidesSM_b21396 and SM_b21397 are separated by 265 nucleotidesSM_b21397 and SM_b21398 are separated by 30 nucleotidesSM_b21398 and SM_b21399 are separated by 336 nucleotides SM_b21395: SM_b21395 - hypothetical protein, at 1,328,742 to 1,329,278 _b21395 SM_b21396: SM_b21396 - hypothetical protein, at 1,329,334 to 1,329,780 _b21396 SM_b21397: SM_b21397 - hypothetical protein, at 1,330,046 to 1,330,282 _b21397 SM_b21398: SM_b21398 - hypothetical protein, at 1,330,313 to 1,330,531 _b21398 SM_b21399: SM_b21399 - hypothetical protein, at 1,330,868 to 1,331,272 _b21399 Position (kb) 1330 1331Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1329.065 kb on + strand, within SM_b21395at 1329.289 kb on + strandat 1329.371 kb on + strandat 1329.371 kb on + strandat 1329.371 kb on + strandat 1329.371 kb on + strandat 1329.372 kb on - strandat 1329.524 kb on + strand, within SM_b21396at 1329.524 kb on + strand, within SM_b21396at 1329.525 kb on - strand, within SM_b21396at 1329.543 kb on + strand, within SM_b21396at 1329.544 kb on - strand, within SM_b21396at 1329.544 kb on - strand, within SM_b21396at 1329.544 kb on - strand, within SM_b21396at 1329.631 kb on + strand, within SM_b21396at 1329.632 kb on - strand, within SM_b21396at 1329.632 kb on - strand, within SM_b21396at 1329.703 kb on + strand, within SM_b21396at 1329.960 kb on + strandat 1329.960 kb on + strandat 1329.960 kb on + strandat 1329.960 kb on + strandat 1329.960 kb on + strandat 1329.961 kb on - strandat 1329.961 kb on - strandat 1329.961 kb on - strandat 1329.961 kb on - strandat 1330.047 kb on + strandat 1330.048 kb on - strandat 1330.197 kb on + strand, within SM_b21397at 1330.224 kb on + strand, within SM_b21397at 1330.224 kb on + strand, within SM_b21397at 1330.285 kb on + strandat 1330.285 kb on + strandat 1330.285 kb on + strandat 1330.286 kb on - strandat 1330.297 kb on + strandat 1330.305 kb on + strandat 1330.409 kb on - strand, within SM_b21398at 1330.507 kb on - strand, within SM_b21398at 1330.656 kb on - strandat 1330.664 kb on + strandat 1330.664 kb on + strandat 1330.664 kb on + strandat 1330.827 kb on - strandat 1330.837 kb on - strandat 1330.837 kb on - strandat 1330.838 kb on + strandat 1330.851 kb on + strandat 1330.851 kb on + strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.937 kb on + strand, within SM_b21399at 1331.002 kb on + strand, within SM_b21399at 1331.002 kb on + strand, within SM_b21399at 1331.002 kb on + strand, within SM_b21399at 1331.002 kb on + strand, within SM_b21399at 1331.003 kb on - strand, within SM_b21399at 1331.003 kb on - strand, within SM_b21399at 1331.003 kb on - strand, within SM_b21399at 1331.083 kb on - strand, within SM_b21399at 1331.083 kb on - strand, within SM_b21399at 1331.164 kb on - strand, within SM_b21399at 1331.167 kb on + strand, within SM_b21399

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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1,329,065 + SM_b21395 0.60 +0.2
1,329,289 + -0.4
1,329,371 + +0.3
1,329,371 + +0.6
1,329,371 + +0.4
1,329,371 + +0.4
1,329,372 - -1.0
1,329,524 + SM_b21396 0.43 +0.5
1,329,524 + SM_b21396 0.43 -0.2
1,329,525 - SM_b21396 0.43 -0.6
1,329,543 + SM_b21396 0.47 +0.5
1,329,544 - SM_b21396 0.47 +0.4
1,329,544 - SM_b21396 0.47 -1.1
1,329,544 - SM_b21396 0.47 +0.4
1,329,631 + SM_b21396 0.66 +1.5
1,329,632 - SM_b21396 0.67 -0.4
1,329,632 - SM_b21396 0.67 -0.5
1,329,703 + SM_b21396 0.83 +0.3
1,329,960 + -2.0
1,329,960 + +0.1
1,329,960 + -1.3
1,329,960 + +0.8
1,329,960 + -0.2
1,329,961 - -1.0
1,329,961 - -0.6
1,329,961 - +0.8
1,329,961 - -0.0
1,330,047 + -2.3
1,330,048 - -0.7
1,330,197 + SM_b21397 0.64 -1.0
1,330,224 + SM_b21397 0.75 +3.0
1,330,224 + SM_b21397 0.75 +0.1
1,330,285 + -0.6
1,330,285 + -0.2
1,330,285 + +1.7
1,330,286 - +1.1
1,330,297 + +1.5
1,330,305 + +0.2
1,330,409 - SM_b21398 0.44 -0.9
1,330,507 - SM_b21398 0.89 -0.7
1,330,656 - +0.1
1,330,664 + +0.8
1,330,664 + +0.4
1,330,664 + -0.4
1,330,827 - +0.5
1,330,837 - -0.3
1,330,837 - +0.5
1,330,838 + -0.0
1,330,851 + -0.5
1,330,851 + -0.1
1,330,852 - +0.1
1,330,852 - +0.3
1,330,852 - +0.2
1,330,937 + SM_b21399 0.17 -1.0
1,331,002 + SM_b21399 0.33 +0.4
1,331,002 + SM_b21399 0.33 +0.3
1,331,002 + SM_b21399 0.33 +0.2
1,331,002 + SM_b21399 0.33 +0.3
1,331,003 - SM_b21399 0.33 -0.1
1,331,003 - SM_b21399 0.33 +0.5
1,331,003 - SM_b21399 0.33 +0.7
1,331,083 - SM_b21399 0.53 +0.1
1,331,083 - SM_b21399 0.53 -1.7
1,331,164 - SM_b21399 0.73 -2.1
1,331,167 + SM_b21399 0.74 +0.6

Or see this region's nucleotide sequence