Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21160

Experiment: Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21158 and SM_b21159 are separated by 19 nucleotidesSM_b21159 and SM_b21160 are separated by 24 nucleotidesSM_b21160 and SM_b21161 are separated by 8 nucleotides SM_b21158: SM_b21158 - transcriptional regulator, at 901,638 to 902,501 _b21158 SM_b21159: SM_b21159 - short-chain dehydrogenase, at 902,521 to 903,297 _b21159 SM_b21160: SM_b21160 - beta-N-acetylhexosaminidase, at 903,322 to 905,241 _b21160 SM_b21161: SM_b21161 - hypothetical protein, at 905,250 to 906,683 _b21161 Position (kb) 903 904 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 902.337 kb on + strand, within SM_b21158at 902.337 kb on + strand, within SM_b21158at 902.338 kb on - strand, within SM_b21158at 902.357 kb on + strand, within SM_b21158at 902.358 kb on - strand, within SM_b21158at 902.365 kb on - strand, within SM_b21158at 902.962 kb on + strand, within SM_b21159at 903.130 kb on + strand, within SM_b21159at 903.292 kb on + strandat 903.442 kb on + strandat 903.442 kb on + strandat 903.443 kb on - strandat 903.443 kb on - strandat 903.443 kb on - strandat 903.632 kb on - strand, within SM_b21160at 903.632 kb on - strand, within SM_b21160at 903.716 kb on + strand, within SM_b21160at 903.873 kb on - strand, within SM_b21160at 903.873 kb on - strand, within SM_b21160at 903.979 kb on + strand, within SM_b21160at 904.018 kb on + strand, within SM_b21160at 904.042 kb on + strand, within SM_b21160at 904.141 kb on + strand, within SM_b21160at 904.141 kb on + strand, within SM_b21160at 904.142 kb on - strand, within SM_b21160at 904.142 kb on - strand, within SM_b21160at 904.215 kb on + strand, within SM_b21160at 904.341 kb on + strand, within SM_b21160at 904.341 kb on + strand, within SM_b21160at 904.341 kb on + strand, within SM_b21160at 904.341 kb on + strand, within SM_b21160at 904.342 kb on - strand, within SM_b21160at 904.342 kb on - strand, within SM_b21160at 904.342 kb on - strandat 904.387 kb on + strand, within SM_b21160at 904.388 kb on - strand, within SM_b21160at 904.463 kb on + strand, within SM_b21160at 904.535 kb on - strand, within SM_b21160at 904.591 kb on + strand, within SM_b21160at 904.591 kb on + strand, within SM_b21160at 904.602 kb on - strand, within SM_b21160at 904.645 kb on + strand, within SM_b21160at 904.645 kb on + strand, within SM_b21160at 904.646 kb on - strand, within SM_b21160at 904.646 kb on - strand, within SM_b21160at 904.647 kb on + strand, within SM_b21160at 904.647 kb on + strand, within SM_b21160at 904.647 kb on + strand, within SM_b21160at 904.648 kb on - strand, within SM_b21160at 904.756 kb on + strand, within SM_b21160at 904.757 kb on - strand, within SM_b21160at 904.942 kb on + strand, within SM_b21160at 904.943 kb on - strand, within SM_b21160at 904.943 kb on - strand, within SM_b21160at 904.945 kb on + strand, within SM_b21160at 904.946 kb on - strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.024 kb on - strand, within SM_b21160at 905.024 kb on - strand, within SM_b21160at 905.024 kb on - strand, within SM_b21160at 905.024 kb on - strand, within SM_b21160at 905.029 kb on + strand, within SM_b21160at 905.029 kb on + strand, within SM_b21160at 905.292 kb on + strandat 905.293 kb on - strandat 905.361 kb on + strandat 905.362 kb on - strandat 905.362 kb on - strandat 905.451 kb on + strand, within SM_b21161at 905.514 kb on + strand, within SM_b21161at 905.515 kb on - strand, within SM_b21161at 905.625 kb on + strand, within SM_b21161at 905.626 kb on - strand, within SM_b21161at 905.672 kb on + strand, within SM_b21161at 905.686 kb on - strand, within SM_b21161at 905.703 kb on - strand, within SM_b21161at 905.709 kb on - strand, within SM_b21161at 905.854 kb on - strand, within SM_b21161at 905.854 kb on - strand, within SM_b21161at 905.916 kb on + strand, within SM_b21161at 906.109 kb on + strand, within SM_b21161

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
remove
902,337 + SM_b21158 0.81 -2.1
902,337 + SM_b21158 0.81 -1.2
902,338 - SM_b21158 0.81 +0.1
902,357 + SM_b21158 0.83 +1.1
902,358 - SM_b21158 0.83 +0.1
902,365 - SM_b21158 0.84 -1.1
902,962 + SM_b21159 0.57 -1.9
903,130 + SM_b21159 0.78 -0.6
903,292 + +0.0
903,442 + +0.8
903,442 + +1.8
903,443 - -0.2
903,443 - -0.4
903,443 - -0.3
903,632 - SM_b21160 0.16 -0.2
903,632 - SM_b21160 0.16 -0.7
903,716 + SM_b21160 0.21 -2.1
903,873 - SM_b21160 0.29 -0.4
903,873 - SM_b21160 0.29 -0.3
903,979 + SM_b21160 0.34 -0.1
904,018 + SM_b21160 0.36 +0.6
904,042 + SM_b21160 0.38 +0.6
904,141 + SM_b21160 0.43 -0.2
904,141 + SM_b21160 0.43 -0.3
904,142 - SM_b21160 0.43 -0.2
904,142 - SM_b21160 0.43 +0.5
904,215 + SM_b21160 0.47 +0.5
904,341 + SM_b21160 0.53 -2.9
904,341 + SM_b21160 0.53 +0.4
904,341 + SM_b21160 0.53 +0.6
904,341 + SM_b21160 0.53 +0.8
904,342 - SM_b21160 0.53 +0.6
904,342 - SM_b21160 0.53 +0.8
904,342 - +0.5
904,387 + SM_b21160 0.55 -0.1
904,388 - SM_b21160 0.56 +0.6
904,463 + SM_b21160 0.59 -0.1
904,535 - SM_b21160 0.63 +0.9
904,591 + SM_b21160 0.66 -0.4
904,591 + SM_b21160 0.66 +1.1
904,602 - SM_b21160 0.67 +0.1
904,645 + SM_b21160 0.69 -0.8
904,645 + SM_b21160 0.69 -0.3
904,646 - SM_b21160 0.69 -0.5
904,646 - SM_b21160 0.69 +0.2
904,647 + SM_b21160 0.69 +0.1
904,647 + SM_b21160 0.69 -2.0
904,647 + SM_b21160 0.69 -1.3
904,648 - SM_b21160 0.69 +0.1
904,756 + SM_b21160 0.75 -0.3
904,757 - SM_b21160 0.75 -0.4
904,942 + SM_b21160 0.84 -0.7
904,943 - SM_b21160 0.84 +0.3
904,943 - SM_b21160 0.84 +0.7
904,945 + SM_b21160 0.85 +1.2
904,946 - SM_b21160 0.85 +0.5
905,023 + SM_b21160 0.89 +2.6
905,023 + SM_b21160 0.89 -0.4
905,023 + SM_b21160 0.89 -0.7
905,023 + SM_b21160 0.89 +0.9
905,023 + SM_b21160 0.89 -1.1
905,023 + SM_b21160 0.89 +0.7
905,024 - SM_b21160 0.89 -0.6
905,024 - SM_b21160 0.89 +0.4
905,024 - SM_b21160 0.89 +0.4
905,024 - SM_b21160 0.89 -0.5
905,029 + SM_b21160 0.89 -2.5
905,029 + SM_b21160 0.89 -0.2
905,292 + -0.9
905,293 - -0.2
905,361 + -1.4
905,362 - +0.4
905,362 - -2.6
905,451 + SM_b21161 0.14 +0.2
905,514 + SM_b21161 0.18 +1.4
905,515 - SM_b21161 0.18 -0.2
905,625 + SM_b21161 0.26 -0.9
905,626 - SM_b21161 0.26 -0.1
905,672 + SM_b21161 0.29 -0.9
905,686 - SM_b21161 0.30 -1.5
905,703 - SM_b21161 0.32 -0.1
905,709 - SM_b21161 0.32 -0.2
905,854 - SM_b21161 0.42 -2.4
905,854 - SM_b21161 0.42 +1.1
905,916 + SM_b21161 0.46 -0.8
906,109 + SM_b21161 0.60 +0.5

Or see this region's nucleotide sequence