Experiment: Thallium(I) acetate 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21605 and SM_b20924 are separated by 61 nucleotides SM_b20924 and SM_b21672 are separated by 32 nucleotides SM_b21672 and SM_b20925 are separated by 100 nucleotides
SM_b21605: SM_b21605 - sugar uptake ABC transporter ATP-binding protein, at 1,146,211 to 1,147,299
_b21605
SM_b20924: SM_b20924 - alpha-L-arabinofuranosidase, at 1,147,361 to 1,148,881
_b20924
SM_b21672: SM_b21672 - hypothetical protein, at 1,148,914 to 1,149,081
_b21672
SM_b20925: SM_b20925 - hypothetical protein, at 1,149,182 to 1,150,300
_b20925
Position (kb)
1147
1148
1149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.734 kb on + strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.735 kb on - strand, within SM_b21605 at 1146.923 kb on + strand, within SM_b21605 at 1146.924 kb on - strand, within SM_b21605 at 1147.024 kb on + strand, within SM_b21605 at 1147.024 kb on + strand, within SM_b21605 at 1147.041 kb on - strand, within SM_b21605 at 1147.049 kb on + strand, within SM_b21605 at 1147.050 kb on - strand, within SM_b21605 at 1147.050 kb on - strand, within SM_b21605 at 1147.050 kb on - strand, within SM_b21605 at 1147.222 kb on + strand at 1147.222 kb on + strand at 1147.223 kb on - strand at 1147.228 kb on + strand at 1147.228 kb on + strand at 1147.229 kb on - strand at 1147.229 kb on - strand at 1147.230 kb on + strand at 1147.230 kb on + strand at 1147.230 kb on + strand at 1147.362 kb on + strand at 1147.362 kb on + strand at 1147.362 kb on + strand at 1147.363 kb on - strand at 1147.395 kb on + strand at 1147.662 kb on + strand, within SM_b20924 at 1147.662 kb on + strand, within SM_b20924 at 1147.663 kb on - strand, within SM_b20924 at 1147.663 kb on - strand, within SM_b20924 at 1147.667 kb on + strand, within SM_b20924 at 1147.668 kb on - strand, within SM_b20924 at 1147.693 kb on - strand, within SM_b20924 at 1147.737 kb on + strand, within SM_b20924 at 1147.738 kb on - strand, within SM_b20924 at 1147.749 kb on + strand, within SM_b20924 at 1147.749 kb on + strand, within SM_b20924 at 1147.749 kb on + strand, within SM_b20924 at 1147.750 kb on - strand, within SM_b20924 at 1147.750 kb on - strand, within SM_b20924 at 1147.762 kb on - strand, within SM_b20924 at 1147.762 kb on - strand, within SM_b20924 at 1147.764 kb on + strand, within SM_b20924 at 1147.765 kb on - strand, within SM_b20924 at 1147.765 kb on - strand, within SM_b20924 at 1147.917 kb on + strand, within SM_b20924 at 1147.917 kb on + strand, within SM_b20924 at 1147.918 kb on - strand, within SM_b20924 at 1148.061 kb on + strand, within SM_b20924 at 1148.062 kb on - strand, within SM_b20924 at 1148.091 kb on + strand, within SM_b20924 at 1148.091 kb on + strand, within SM_b20924 at 1148.118 kb on + strand, within SM_b20924 at 1148.119 kb on - strand, within SM_b20924 at 1148.121 kb on + strand, within SM_b20924 at 1148.121 kb on + strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.122 kb on - strand, within SM_b20924 at 1148.154 kb on + strand, within SM_b20924 at 1148.173 kb on - strand, within SM_b20924 at 1148.173 kb on - strand, within SM_b20924 at 1148.173 kb on - strand, within SM_b20924 at 1148.187 kb on + strand, within SM_b20924 at 1148.188 kb on - strand, within SM_b20924 at 1148.224 kb on - strand, within SM_b20924 at 1148.283 kb on + strand, within SM_b20924 at 1148.283 kb on + strand, within SM_b20924 at 1148.284 kb on - strand, within SM_b20924 at 1148.300 kb on + strand, within SM_b20924 at 1148.301 kb on - strand, within SM_b20924 at 1148.409 kb on + strand, within SM_b20924 at 1148.410 kb on - strand, within SM_b20924 at 1148.439 kb on + strand, within SM_b20924 at 1148.440 kb on - strand, within SM_b20924 at 1148.440 kb on - strand, within SM_b20924 at 1148.463 kb on + strand, within SM_b20924 at 1148.463 kb on + strand, within SM_b20924 at 1148.655 kb on + strand, within SM_b20924 at 1148.655 kb on + strand, within SM_b20924 at 1148.699 kb on - strand, within SM_b20924 at 1148.699 kb on - strand, within SM_b20924 at 1148.784 kb on + strand at 1148.821 kb on - strand at 1148.822 kb on + strand at 1148.848 kb on + strand at 1148.848 kb on + strand at 1148.849 kb on - strand at 1148.849 kb on - strand at 1148.849 kb on - strand at 1148.851 kb on - strand at 1148.851 kb on - strand at 1148.897 kb on - strand at 1148.897 kb on - strand at 1149.009 kb on + strand, within SM_b21672 at 1149.079 kb on + strand at 1149.080 kb on - strand at 1149.088 kb on - strand at 1149.174 kb on + strand at 1149.175 kb on - strand at 1149.264 kb on + strand at 1149.265 kb on - strand at 1149.408 kb on + strand, within SM_b20925 at 1149.409 kb on - strand, within SM_b20925 at 1149.561 kb on + strand, within SM_b20925 at 1149.561 kb on + strand, within SM_b20925 at 1149.561 kb on + strand, within SM_b20925 at 1149.634 kb on + strand, within SM_b20925 at 1149.635 kb on - strand, within SM_b20925 at 1149.635 kb on - strand, within SM_b20925 at 1149.635 kb on - strand, within SM_b20925 at 1149.637 kb on + strand, within SM_b20925 at 1149.638 kb on - strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.780 kb on - strand, within SM_b20925 at 1149.794 kb on - strand, within SM_b20925 at 1149.815 kb on + strand, within SM_b20925
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml remove 1,146,734 + SM_b21605 0.48 +0.1 1,146,734 + SM_b21605 0.48 +0.1 1,146,734 + SM_b21605 0.48 -1.4 1,146,734 + SM_b21605 0.48 -2.4 1,146,734 + SM_b21605 0.48 -3.4 1,146,734 + SM_b21605 0.48 -0.3 1,146,734 + SM_b21605 0.48 -1.8 1,146,734 + SM_b21605 0.48 +1.0 1,146,735 - SM_b21605 0.48 -0.0 1,146,735 - SM_b21605 0.48 -1.2 1,146,735 - SM_b21605 0.48 +2.3 1,146,735 - SM_b21605 0.48 +0.3 1,146,735 - SM_b21605 0.48 -0.3 1,146,923 + SM_b21605 0.65 +1.0 1,146,924 - SM_b21605 0.65 +0.8 1,147,024 + SM_b21605 0.75 -0.5 1,147,024 + SM_b21605 0.75 -0.4 1,147,041 - SM_b21605 0.76 +0.2 1,147,049 + SM_b21605 0.77 -1.0 1,147,050 - SM_b21605 0.77 +0.1 1,147,050 - SM_b21605 0.77 +0.3 1,147,050 - SM_b21605 0.77 -0.6 1,147,222 + -2.6 1,147,222 + -2.6 1,147,223 - +1.6 1,147,228 + -0.1 1,147,228 + +0.3 1,147,229 - +0.3 1,147,229 - +0.6 1,147,230 + -0.4 1,147,230 + -0.8 1,147,230 + -3.2 1,147,362 + +2.2 1,147,362 + +0.9 1,147,362 + +0.4 1,147,363 - -0.6 1,147,395 + +0.3 1,147,662 + SM_b20924 0.20 +3.5 1,147,662 + SM_b20924 0.20 -0.4 1,147,663 - SM_b20924 0.20 -0.2 1,147,663 - SM_b20924 0.20 -2.2 1,147,667 + SM_b20924 0.20 +0.9 1,147,668 - SM_b20924 0.20 -0.2 1,147,693 - SM_b20924 0.22 -0.2 1,147,737 + SM_b20924 0.25 -0.1 1,147,738 - SM_b20924 0.25 -0.4 1,147,749 + SM_b20924 0.26 -1.9 1,147,749 + SM_b20924 0.26 +0.2 1,147,749 + SM_b20924 0.26 -0.8 1,147,750 - SM_b20924 0.26 +0.1 1,147,750 - SM_b20924 0.26 +0.1 1,147,762 - SM_b20924 0.26 -1.9 1,147,762 - SM_b20924 0.26 -0.5 1,147,764 + SM_b20924 0.26 +1.2 1,147,765 - SM_b20924 0.27 -1.5 1,147,765 - SM_b20924 0.27 +0.5 1,147,917 + SM_b20924 0.37 -1.4 1,147,917 + SM_b20924 0.37 -0.5 1,147,918 - SM_b20924 0.37 -0.7 1,148,061 + SM_b20924 0.46 -0.2 1,148,062 - SM_b20924 0.46 -0.9 1,148,091 + SM_b20924 0.48 +0.2 1,148,091 + SM_b20924 0.48 -0.3 1,148,118 + SM_b20924 0.50 -0.6 1,148,119 - SM_b20924 0.50 -0.1 1,148,121 + SM_b20924 0.50 -1.2 1,148,121 + SM_b20924 0.50 +0.3 1,148,122 - SM_b20924 0.50 +0.1 1,148,122 - SM_b20924 0.50 -0.1 1,148,122 - SM_b20924 0.50 -1.4 1,148,122 - SM_b20924 0.50 +0.6 1,148,122 - SM_b20924 0.50 -0.4 1,148,154 + SM_b20924 0.52 +0.9 1,148,173 - SM_b20924 0.53 +0.7 1,148,173 - SM_b20924 0.53 -0.0 1,148,173 - SM_b20924 0.53 -0.5 1,148,187 + SM_b20924 0.54 -0.7 1,148,188 - SM_b20924 0.54 -0.5 1,148,224 - SM_b20924 0.57 -0.5 1,148,283 + SM_b20924 0.61 -0.9 1,148,283 + SM_b20924 0.61 -2.2 1,148,284 - SM_b20924 0.61 -1.1 1,148,300 + SM_b20924 0.62 +1.5 1,148,301 - SM_b20924 0.62 -0.4 1,148,409 + SM_b20924 0.69 +2.5 1,148,410 - SM_b20924 0.69 -0.1 1,148,439 + SM_b20924 0.71 -0.4 1,148,440 - SM_b20924 0.71 -3.7 1,148,440 - SM_b20924 0.71 -0.7 1,148,463 + SM_b20924 0.72 -0.1 1,148,463 + SM_b20924 0.72 +5.7 1,148,655 + SM_b20924 0.85 -0.1 1,148,655 + SM_b20924 0.85 +0.5 1,148,699 - SM_b20924 0.88 -0.6 1,148,699 - SM_b20924 0.88 -0.7 1,148,784 + +2.4 1,148,821 - -2.7 1,148,822 + -1.2 1,148,848 + +0.9 1,148,848 + +1.4 1,148,849 - +1.1 1,148,849 - -1.0 1,148,849 - -0.2 1,148,851 - -0.6 1,148,851 - -0.3 1,148,897 - +0.3 1,148,897 - +1.0 1,149,009 + SM_b21672 0.57 -0.9 1,149,079 + -1.1 1,149,080 - +0.2 1,149,088 - +1.6 1,149,174 + -2.9 1,149,175 - -2.5 1,149,264 + -0.3 1,149,265 - -0.1 1,149,408 + SM_b20925 0.20 -0.0 1,149,409 - SM_b20925 0.20 -2.2 1,149,561 + SM_b20925 0.34 -0.1 1,149,561 + SM_b20925 0.34 +0.4 1,149,561 + SM_b20925 0.34 -1.3 1,149,634 + SM_b20925 0.40 +0.5 1,149,635 - SM_b20925 0.40 -1.0 1,149,635 - SM_b20925 0.40 +0.2 1,149,635 - SM_b20925 0.40 +0.2 1,149,637 + SM_b20925 0.41 -0.5 1,149,638 - SM_b20925 0.41 -0.8 1,149,779 + SM_b20925 0.53 -1.3 1,149,779 + SM_b20925 0.53 -2.2 1,149,779 + SM_b20925 0.53 +1.3 1,149,779 + SM_b20925 0.53 -0.1 1,149,780 - SM_b20925 0.53 -0.7 1,149,794 - SM_b20925 0.55 +0.9 1,149,815 + SM_b20925 0.57 +0.4
Or see this region's nucleotide sequence