Experiment: Thallium(I) acetate 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20859 and SM_b21677 are separated by 81 nucleotides SM_b21677 and SM_b20860 overlap by 11 nucleotides SM_b20860 and SM_b20861 are separated by 98 nucleotides
SM_b20859: SM_b20859 - AraC family transcriptional regulator, at 1,263,877 to 1,264,827
_b20859
SM_b21677: SM_b21677 - signal peptide, at 1,264,909 to 1,265,277
_b21677
SM_b20860: SM_b20860 - non-heme haloperodidase, at 1,265,267 to 1,266,097
_b20860
SM_b20861: SM_b20861 - dehydrogenase, oxidoreductase FAD flavoprotein, at 1,266,196 to 1,267,401
_b20861
Position (kb)
1265
1266
1267 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1264.300 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.396 kb on - strand, within SM_b20859 at 1264.408 kb on - strand, within SM_b20859 at 1264.408 kb on - strand, within SM_b20859 at 1264.427 kb on + strand, within SM_b20859 at 1264.427 kb on + strand, within SM_b20859 at 1264.464 kb on + strand, within SM_b20859 at 1264.465 kb on - strand, within SM_b20859 at 1264.465 kb on - strand, within SM_b20859 at 1264.465 kb on - strand, within SM_b20859 at 1264.670 kb on - strand, within SM_b20859 at 1264.689 kb on - strand, within SM_b20859 at 1264.745 kb on - strand at 1264.746 kb on + strand at 1264.746 kb on + strand at 1264.747 kb on - strand at 1264.747 kb on - strand at 1264.832 kb on + strand at 1264.832 kb on + strand at 1265.011 kb on - strand, within SM_b21677 at 1265.049 kb on + strand, within SM_b21677 at 1265.093 kb on - strand, within SM_b21677 at 1265.093 kb on - strand, within SM_b21677 at 1265.206 kb on - strand, within SM_b21677 at 1265.246 kb on + strand at 1265.246 kb on + strand at 1265.247 kb on - strand at 1265.247 kb on - strand at 1265.247 kb on - strand at 1265.247 kb on - strand at 1265.278 kb on + strand at 1265.278 kb on + strand at 1265.278 kb on + strand at 1265.279 kb on - strand at 1265.279 kb on - strand at 1265.279 kb on - strand at 1265.307 kb on - strand at 1265.490 kb on - strand, within SM_b20860 at 1265.490 kb on - strand, within SM_b20860 at 1265.490 kb on - strand, within SM_b20860 at 1265.490 kb on - strand, within SM_b20860 at 1265.623 kb on + strand, within SM_b20860 at 1265.624 kb on - strand, within SM_b20860 at 1265.624 kb on - strand, within SM_b20860 at 1265.624 kb on - strand, within SM_b20860 at 1265.691 kb on + strand, within SM_b20860 at 1265.703 kb on + strand, within SM_b20860 at 1265.703 kb on + strand, within SM_b20860 at 1265.738 kb on + strand, within SM_b20860 at 1265.765 kb on + strand, within SM_b20860 at 1265.855 kb on + strand, within SM_b20860 at 1265.855 kb on + strand, within SM_b20860 at 1265.856 kb on - strand, within SM_b20860 at 1265.863 kb on + strand, within SM_b20860 at 1265.863 kb on + strand, within SM_b20860 at 1265.864 kb on - strand, within SM_b20860 at 1265.996 kb on - strand, within SM_b20860 at 1266.017 kb on + strand at 1266.017 kb on + strand at 1266.058 kb on + strand at 1266.075 kb on + strand at 1266.075 kb on + strand at 1266.076 kb on - strand at 1266.235 kb on + strand at 1266.235 kb on + strand at 1266.235 kb on + strand at 1266.236 kb on - strand at 1266.236 kb on - strand at 1266.236 kb on - strand at 1266.308 kb on + strand at 1266.309 kb on - strand at 1266.346 kb on + strand, within SM_b20861 at 1266.347 kb on - strand, within SM_b20861 at 1266.390 kb on - strand, within SM_b20861 at 1266.390 kb on - strand, within SM_b20861 at 1266.390 kb on - strand at 1266.390 kb on - strand, within SM_b20861 at 1266.412 kb on + strand, within SM_b20861 at 1266.413 kb on - strand, within SM_b20861 at 1266.458 kb on + strand, within SM_b20861 at 1266.458 kb on + strand, within SM_b20861 at 1266.459 kb on - strand, within SM_b20861 at 1266.500 kb on - strand, within SM_b20861 at 1266.919 kb on - strand, within SM_b20861 at 1267.035 kb on - strand, within SM_b20861
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml remove 1,264,300 - SM_b20859 0.44 +3.9 1,264,300 - SM_b20859 0.44 -0.1 1,264,300 - SM_b20859 0.44 -0.2 1,264,350 + SM_b20859 0.50 +1.2 1,264,350 + SM_b20859 0.50 +1.9 1,264,350 + SM_b20859 0.50 -0.7 1,264,350 + SM_b20859 0.50 +0.2 1,264,350 + SM_b20859 0.50 -1.4 1,264,351 - SM_b20859 0.50 -0.8 1,264,351 - SM_b20859 0.50 -0.6 1,264,351 - SM_b20859 0.50 +0.0 1,264,396 - SM_b20859 0.55 +0.7 1,264,408 - SM_b20859 0.56 -0.1 1,264,408 - SM_b20859 0.56 +1.1 1,264,427 + SM_b20859 0.58 -0.0 1,264,427 + SM_b20859 0.58 -2.4 1,264,464 + SM_b20859 0.62 +1.0 1,264,465 - SM_b20859 0.62 -0.5 1,264,465 - SM_b20859 0.62 -1.7 1,264,465 - SM_b20859 0.62 +1.5 1,264,670 - SM_b20859 0.83 +0.6 1,264,689 - SM_b20859 0.85 -2.7 1,264,745 - +0.2 1,264,746 + -0.2 1,264,746 + +0.5 1,264,747 - +0.3 1,264,747 - -0.5 1,264,832 + -3.1 1,264,832 + +1.5 1,265,011 - SM_b21677 0.28 -0.1 1,265,049 + SM_b21677 0.38 -1.5 1,265,093 - SM_b21677 0.50 +1.8 1,265,093 - SM_b21677 0.50 -0.7 1,265,206 - SM_b21677 0.80 +0.2 1,265,246 + -0.8 1,265,246 + +0.1 1,265,247 - -1.2 1,265,247 - +1.7 1,265,247 - -0.6 1,265,247 - -0.0 1,265,278 + -0.8 1,265,278 + -1.0 1,265,278 + -0.2 1,265,279 - -3.3 1,265,279 - +0.6 1,265,279 - +0.3 1,265,307 - -0.2 1,265,490 - SM_b20860 0.27 +1.9 1,265,490 - SM_b20860 0.27 -2.4 1,265,490 - SM_b20860 0.27 -0.8 1,265,490 - SM_b20860 0.27 -1.2 1,265,623 + SM_b20860 0.43 -2.6 1,265,624 - SM_b20860 0.43 +1.3 1,265,624 - SM_b20860 0.43 -2.1 1,265,624 - SM_b20860 0.43 -0.9 1,265,691 + SM_b20860 0.51 +0.1 1,265,703 + SM_b20860 0.52 +0.3 1,265,703 + SM_b20860 0.52 -0.3 1,265,738 + SM_b20860 0.57 +0.4 1,265,765 + SM_b20860 0.60 -2.2 1,265,855 + SM_b20860 0.71 -1.2 1,265,855 + SM_b20860 0.71 -1.6 1,265,856 - SM_b20860 0.71 +1.1 1,265,863 + SM_b20860 0.72 -0.6 1,265,863 + SM_b20860 0.72 +1.4 1,265,864 - SM_b20860 0.72 -0.2 1,265,996 - SM_b20860 0.88 -0.8 1,266,017 + -0.5 1,266,017 + -0.1 1,266,058 + -0.3 1,266,075 + +0.8 1,266,075 + -0.9 1,266,076 - -1.4 1,266,235 + -1.4 1,266,235 + +0.3 1,266,235 + -0.0 1,266,236 - +1.1 1,266,236 - -0.1 1,266,236 - +0.9 1,266,308 + +0.1 1,266,309 - +0.2 1,266,346 + SM_b20861 0.12 -0.4 1,266,347 - SM_b20861 0.13 -0.2 1,266,390 - SM_b20861 0.16 -1.3 1,266,390 - SM_b20861 0.16 +0.3 1,266,390 - +1.1 1,266,390 - SM_b20861 0.16 -2.3 1,266,412 + SM_b20861 0.18 -1.7 1,266,413 - SM_b20861 0.18 +0.3 1,266,458 + SM_b20861 0.22 -1.5 1,266,458 + SM_b20861 0.22 -0.9 1,266,459 - SM_b20861 0.22 +0.8 1,266,500 - SM_b20861 0.25 -1.1 1,266,919 - SM_b20861 0.60 +0.1 1,267,035 - SM_b20861 0.70 +0.0
Or see this region's nucleotide sequence