Experiment: Thallium(I) acetate 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20784 and SM_b20785 overlap by 20 nucleotides SM_b20785 and SM_b20786 overlap by 4 nucleotides SM_b20786 and SM_b20787 are separated by 6 nucleotides SM_b20787 and SM_b20568 are separated by 101 nucleotides
SM_b20784: SM_b20784 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,577,129 to 1,577,845
_b20784
SM_b20785: SM_b20785 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,577,826 to 1,578,590
_b20785
SM_b20786: SM_b20786 - branched-chain amino acid ABC transporter permease, at 1,578,587 to 1,579,588
_b20786
SM_b20787: SM_b20787 - branched-chain amino acid ABC transporter permease, at 1,579,595 to 1,580,458
_b20787
SM_b20568: SM_b20568 - amino acid ABC transporter substrate-binding protein, at 1,580,560 to 1,581,771
_b20568
Position (kb)
1578
1579
1580 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1577.674 kb on - strand, within SM_b20784 at 1577.674 kb on - strand, within SM_b20784 at 1577.852 kb on - strand at 1577.863 kb on + strand at 1577.864 kb on - strand at 1578.408 kb on + strand, within SM_b20785 at 1578.909 kb on + strand, within SM_b20786 at 1578.909 kb on + strand, within SM_b20786 at 1578.910 kb on - strand, within SM_b20786 at 1578.910 kb on - strand, within SM_b20786 at 1579.062 kb on + strand, within SM_b20786 at 1579.063 kb on - strand, within SM_b20786 at 1579.063 kb on - strand, within SM_b20786 at 1579.344 kb on + strand, within SM_b20786 at 1579.421 kb on + strand, within SM_b20786 at 1579.421 kb on + strand, within SM_b20786 at 1579.482 kb on + strand, within SM_b20786 at 1579.483 kb on - strand, within SM_b20786 at 1579.596 kb on + strand at 1579.596 kb on + strand at 1579.596 kb on + strand at 1579.597 kb on - strand at 1579.597 kb on - strand at 1579.600 kb on + strand at 1579.600 kb on + strand at 1579.600 kb on + strand at 1579.600 kb on + strand at 1579.600 kb on + strand at 1579.601 kb on - strand at 1579.601 kb on - strand at 1579.601 kb on - strand at 1579.656 kb on + strand at 1579.656 kb on + strand at 1579.657 kb on - strand at 1579.689 kb on + strand, within SM_b20787 at 1579.703 kb on - strand, within SM_b20787 at 1579.795 kb on - strand, within SM_b20787 at 1579.795 kb on - strand, within SM_b20787 at 1579.806 kb on + strand, within SM_b20787 at 1579.806 kb on + strand, within SM_b20787 at 1579.807 kb on - strand, within SM_b20787 at 1579.809 kb on + strand, within SM_b20787 at 1579.890 kb on + strand, within SM_b20787 at 1579.891 kb on - strand, within SM_b20787 at 1580.030 kb on + strand, within SM_b20787 at 1580.124 kb on + strand, within SM_b20787 at 1580.125 kb on - strand, within SM_b20787 at 1580.196 kb on + strand, within SM_b20787 at 1580.196 kb on + strand, within SM_b20787 at 1580.197 kb on - strand, within SM_b20787 at 1580.209 kb on - strand, within SM_b20787 at 1580.304 kb on + strand, within SM_b20787 at 1580.305 kb on - strand, within SM_b20787 at 1580.315 kb on - strand, within SM_b20787 at 1580.316 kb on + strand, within SM_b20787 at 1580.438 kb on + strand at 1580.470 kb on - strand at 1580.544 kb on + strand at 1580.545 kb on - strand at 1580.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml remove 1,577,674 - SM_b20784 0.76 +0.3 1,577,674 - SM_b20784 0.76 -3.2 1,577,852 - -0.5 1,577,863 + +0.0 1,577,864 - -0.4 1,578,408 + SM_b20785 0.76 -0.3 1,578,909 + SM_b20786 0.32 -0.4 1,578,909 + SM_b20786 0.32 -1.8 1,578,910 - SM_b20786 0.32 -0.4 1,578,910 - SM_b20786 0.32 -2.2 1,579,062 + SM_b20786 0.47 -0.2 1,579,063 - SM_b20786 0.48 -2.1 1,579,063 - SM_b20786 0.48 +0.1 1,579,344 + SM_b20786 0.76 -0.5 1,579,421 + SM_b20786 0.83 -1.8 1,579,421 + SM_b20786 0.83 -1.6 1,579,482 + SM_b20786 0.89 +0.5 1,579,483 - SM_b20786 0.89 -0.5 1,579,596 + +0.3 1,579,596 + -2.2 1,579,596 + -0.2 1,579,597 - -0.8 1,579,597 - +0.2 1,579,600 + -0.8 1,579,600 + -0.5 1,579,600 + -0.5 1,579,600 + -1.1 1,579,600 + -0.6 1,579,601 - +0.6 1,579,601 - -0.4 1,579,601 - -1.4 1,579,656 + -2.0 1,579,656 + -3.0 1,579,657 - +1.0 1,579,689 + SM_b20787 0.11 -0.6 1,579,703 - SM_b20787 0.12 -0.0 1,579,795 - SM_b20787 0.23 -1.2 1,579,795 - SM_b20787 0.23 +0.5 1,579,806 + SM_b20787 0.24 -1.2 1,579,806 + SM_b20787 0.24 +0.5 1,579,807 - SM_b20787 0.25 +0.1 1,579,809 + SM_b20787 0.25 +1.5 1,579,890 + SM_b20787 0.34 -0.8 1,579,891 - SM_b20787 0.34 +0.2 1,580,030 + SM_b20787 0.50 -1.0 1,580,124 + SM_b20787 0.61 +0.0 1,580,125 - SM_b20787 0.61 +0.2 1,580,196 + SM_b20787 0.70 +0.6 1,580,196 + SM_b20787 0.70 -0.4 1,580,197 - SM_b20787 0.70 -1.0 1,580,209 - SM_b20787 0.71 -0.7 1,580,304 + SM_b20787 0.82 +0.6 1,580,305 - SM_b20787 0.82 -0.2 1,580,315 - SM_b20787 0.83 +0.9 1,580,316 + SM_b20787 0.83 -0.5 1,580,438 + +0.5 1,580,470 - -0.5 1,580,544 + -3.5 1,580,545 - +0.5 1,580,545 - +0.5
Or see this region's nucleotide sequence