Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20761

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20759 and SM_b20760 overlap by 1 nucleotidesSM_b20760 and SM_b20761 are separated by 4 nucleotidesSM_b20761 and SM_b20762 overlap by 4 nucleotidesSM_b20762 and SM_b20763 overlap by 4 nucleotides SM_b20759: SM_b20759 - carbon-phosphorus lyase, at 1,551,986 to 1,552,456 _b20759 SM_b20760: SM_b20760 - carbon-phosphorus lyase, at 1,552,456 to 1,553,058 _b20760 SM_b20761: SM_b20761 - carbon-phosphorus lyase, at 1,553,063 to 1,554,169 _b20761 SM_b20762: SM_b20762 - carbon-phosphorus lyase, at 1,554,166 to 1,555,059 _b20762 SM_b20763: SM_b20763 - phosphonate C-P lyase system protein PhnK, at 1,555,056 to 1,555,832 _b20763 Position (kb) 1553 1554 1555Strain fitness (log2 ratio) -3 -2 -1 0 1at 1552.478 kb on - strandat 1552.479 kb on + strandat 1552.661 kb on + strand, within SM_b20760at 1552.817 kb on - strand, within SM_b20760at 1553.056 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.067 kb on - strandat 1553.067 kb on - strandat 1553.070 kb on + strandat 1553.163 kb on + strandat 1553.163 kb on + strandat 1553.164 kb on - strandat 1553.225 kb on + strand, within SM_b20761at 1553.225 kb on + strand, within SM_b20761at 1553.330 kb on + strand, within SM_b20761at 1553.387 kb on + strand, within SM_b20761at 1553.388 kb on - strand, within SM_b20761at 1553.432 kb on + strand, within SM_b20761at 1553.435 kb on - strand, within SM_b20761at 1553.435 kb on - strand, within SM_b20761at 1553.709 kb on - strand, within SM_b20761at 1554.066 kb on - strandat 1554.184 kb on + strandat 1554.184 kb on + strandat 1554.184 kb on + strandat 1554.185 kb on - strandat 1554.197 kb on - strandat 1554.301 kb on + strand, within SM_b20762at 1554.301 kb on + strand, within SM_b20762at 1554.302 kb on - strand, within SM_b20762at 1554.533 kb on - strand, within SM_b20762at 1554.638 kb on - strand, within SM_b20762at 1554.676 kb on + strand, within SM_b20762at 1554.676 kb on + strand, within SM_b20762at 1554.677 kb on - strand, within SM_b20762at 1554.756 kb on + strand, within SM_b20762at 1554.756 kb on + strand, within SM_b20762at 1554.756 kb on + strand, within SM_b20762at 1554.756 kb on + strand, within SM_b20762at 1554.757 kb on - strand, within SM_b20762at 1554.757 kb on - strand, within SM_b20762at 1554.757 kb on - strand, within SM_b20762at 1554.757 kb on - strand, within SM_b20762at 1554.757 kb on - strand, within SM_b20762at 1554.757 kb on - strand, within SM_b20762at 1554.805 kb on + strand, within SM_b20762at 1554.805 kb on + strand, within SM_b20762at 1554.805 kb on + strand, within SM_b20762at 1554.806 kb on - strand, within SM_b20762at 1554.806 kb on - strand, within SM_b20762at 1554.806 kb on - strand, within SM_b20762at 1554.806 kb on - strand, within SM_b20762at 1554.820 kb on + strand, within SM_b20762at 1554.822 kb on + strand, within SM_b20762at 1554.822 kb on + strand, within SM_b20762at 1554.822 kb on + strand, within SM_b20762at 1554.913 kb on + strand, within SM_b20762at 1555.101 kb on + strandat 1555.144 kb on - strand, within SM_b20763

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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1,552,478 - +0.2
1,552,479 + +0.1
1,552,661 + SM_b20760 0.34 +0.1
1,552,817 - SM_b20760 0.60 +0.2
1,553,056 + +0.2
1,553,066 + -0.4
1,553,066 + -3.1
1,553,066 + -0.3
1,553,066 + -0.2
1,553,066 + -2.5
1,553,066 + +0.4
1,553,067 - -1.4
1,553,067 - -1.3
1,553,070 + -0.4
1,553,163 + -1.8
1,553,163 + -0.2
1,553,164 - -3.4
1,553,225 + SM_b20761 0.15 +1.2
1,553,225 + SM_b20761 0.15 +0.8
1,553,330 + SM_b20761 0.24 +0.2
1,553,387 + SM_b20761 0.29 -0.0
1,553,388 - SM_b20761 0.29 +0.2
1,553,432 + SM_b20761 0.33 +0.7
1,553,435 - SM_b20761 0.34 +0.8
1,553,435 - SM_b20761 0.34 -0.8
1,553,709 - SM_b20761 0.58 -0.3
1,554,066 - -0.9
1,554,184 + -0.4
1,554,184 + -0.7
1,554,184 + +0.9
1,554,185 - +0.0
1,554,197 - +1.0
1,554,301 + SM_b20762 0.15 -0.1
1,554,301 + SM_b20762 0.15 -1.5
1,554,302 - SM_b20762 0.15 -1.8
1,554,533 - SM_b20762 0.41 -0.6
1,554,638 - SM_b20762 0.53 -0.2
1,554,676 + SM_b20762 0.57 +1.1
1,554,676 + SM_b20762 0.57 +0.1
1,554,677 - SM_b20762 0.57 +0.3
1,554,756 + SM_b20762 0.66 +1.2
1,554,756 + SM_b20762 0.66 -0.4
1,554,756 + SM_b20762 0.66 -0.2
1,554,756 + SM_b20762 0.66 +0.2
1,554,757 - SM_b20762 0.66 +0.1
1,554,757 - SM_b20762 0.66 -0.5
1,554,757 - SM_b20762 0.66 -1.8
1,554,757 - SM_b20762 0.66 -1.2
1,554,757 - SM_b20762 0.66 +0.9
1,554,757 - SM_b20762 0.66 -0.7
1,554,805 + SM_b20762 0.71 +0.7
1,554,805 + SM_b20762 0.71 -1.7
1,554,805 + SM_b20762 0.71 +1.2
1,554,806 - SM_b20762 0.72 +1.5
1,554,806 - SM_b20762 0.72 +1.0
1,554,806 - SM_b20762 0.72 +0.3
1,554,806 - SM_b20762 0.72 +0.1
1,554,820 + SM_b20762 0.73 +0.6
1,554,822 + SM_b20762 0.73 -0.1
1,554,822 + SM_b20762 0.73 -0.9
1,554,822 + SM_b20762 0.73 -0.1
1,554,913 + SM_b20762 0.84 -0.8
1,555,101 + -0.6
1,555,144 - SM_b20763 0.11 -0.2

Or see this region's nucleotide sequence