Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20620

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20619 and SM_b20620 are separated by 42 nucleotidesSM_b20620 and SM_b20621 are separated by 46 nucleotides SM_b20619: SM_b20619 - regulatory protein, at 1,638,400 to 1,639,389 _b20619 SM_b20620: SM_b20620 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,639,432 to 1,640,475 _b20620 SM_b20621: SM_b20621 - sugar uptake ABC transporter permease, at 1,640,522 to 1,641,478 _b20621 Position (kb) 1639 1640 1641Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1638.485 kb on - strandat 1638.485 kb on - strandat 1638.487 kb on + strandat 1638.488 kb on - strandat 1638.488 kb on - strandat 1638.488 kb on - strandat 1638.489 kb on + strandat 1638.489 kb on + strandat 1638.490 kb on - strandat 1638.490 kb on - strandat 1638.490 kb on - strandat 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.584 kb on + strand, within SM_b20619at 1638.699 kb on - strand, within SM_b20619at 1638.794 kb on + strand, within SM_b20619at 1638.794 kb on + strand, within SM_b20619at 1638.794 kb on + strand, within SM_b20619at 1638.795 kb on - strand, within SM_b20619at 1638.795 kb on - strand, within SM_b20619at 1638.795 kb on - strand, within SM_b20619at 1638.797 kb on - strand, within SM_b20619at 1638.804 kb on - strand, within SM_b20619at 1638.877 kb on + strand, within SM_b20619at 1638.878 kb on - strand, within SM_b20619at 1638.883 kb on + strand, within SM_b20619at 1639.051 kb on + strand, within SM_b20619at 1639.051 kb on + strand, within SM_b20619at 1639.052 kb on - strand, within SM_b20619at 1639.392 kb on - strandat 1639.429 kb on + strandat 1639.430 kb on - strandat 1639.722 kb on - strand, within SM_b20620at 1639.913 kb on + strand, within SM_b20620at 1639.977 kb on - strand, within SM_b20620at 1639.982 kb on + strand, within SM_b20620at 1639.983 kb on - strand, within SM_b20620at 1639.983 kb on - strand, within SM_b20620at 1640.176 kb on - strand, within SM_b20620at 1640.201 kb on - strand, within SM_b20620at 1640.218 kb on - strand, within SM_b20620at 1640.218 kb on - strand, within SM_b20620at 1640.306 kb on + strand, within SM_b20620at 1640.307 kb on - strand, within SM_b20620at 1640.336 kb on + strand, within SM_b20620at 1640.468 kb on - strandat 1640.555 kb on - strandat 1640.604 kb on + strandat 1640.604 kb on + strandat 1640.607 kb on + strandat 1640.607 kb on + strandat 1640.607 kb on + strandat 1640.608 kb on - strandat 1640.640 kb on - strand, within SM_b20621at 1640.640 kb on - strand, within SM_b20621at 1640.640 kb on - strand, within SM_b20621at 1640.806 kb on + strand, within SM_b20621at 1640.833 kb on - strand, within SM_b20621at 1640.847 kb on + strand, within SM_b20621at 1640.847 kb on + strand, within SM_b20621at 1640.905 kb on - strand, within SM_b20621at 1640.909 kb on + strand, within SM_b20621at 1640.909 kb on + strand, within SM_b20621at 1640.909 kb on + strand, within SM_b20621at 1640.909 kb on + strand, within SM_b20621at 1640.910 kb on - strand, within SM_b20621at 1640.951 kb on + strand, within SM_b20621at 1641.236 kb on + strand, within SM_b20621at 1641.237 kb on - strand, within SM_b20621at 1641.237 kb on - strand, within SM_b20621at 1641.282 kb on + strand, within SM_b20621at 1641.282 kb on + strand, within SM_b20621at 1641.282 kb on + strand, within SM_b20621at 1641.282 kb on + strand, within SM_b20621at 1641.283 kb on - strand, within SM_b20621at 1641.283 kb on - strand, within SM_b20621at 1641.283 kb on - strand, within SM_b20621

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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1,638,485 - -0.6
1,638,485 - -0.3
1,638,487 + +0.9
1,638,488 - -0.1
1,638,488 - -0.4
1,638,488 - -1.4
1,638,489 + -1.2
1,638,489 + +1.2
1,638,490 - -0.8
1,638,490 - -0.5
1,638,490 - -0.4
1,638,557 - SM_b20619 0.16 -0.7
1,638,557 - SM_b20619 0.16 +0.6
1,638,557 - SM_b20619 0.16 -0.1
1,638,557 - SM_b20619 0.16 -0.0
1,638,557 - SM_b20619 0.16 +1.0
1,638,557 - SM_b20619 0.16 +0.7
1,638,584 + SM_b20619 0.19 +0.0
1,638,699 - SM_b20619 0.30 -0.4
1,638,794 + SM_b20619 0.40 -0.0
1,638,794 + SM_b20619 0.40 -0.1
1,638,794 + SM_b20619 0.40 -1.4
1,638,795 - SM_b20619 0.40 +0.2
1,638,795 - SM_b20619 0.40 -0.4
1,638,795 - SM_b20619 0.40 +0.9
1,638,797 - SM_b20619 0.40 +0.2
1,638,804 - SM_b20619 0.41 +0.9
1,638,877 + SM_b20619 0.48 +1.6
1,638,878 - SM_b20619 0.48 -0.8
1,638,883 + SM_b20619 0.49 -0.4
1,639,051 + SM_b20619 0.66 -0.7
1,639,051 + SM_b20619 0.66 +1.2
1,639,052 - SM_b20619 0.66 -0.2
1,639,392 - +0.6
1,639,429 + +0.4
1,639,430 - +0.3
1,639,722 - SM_b20620 0.28 -1.5
1,639,913 + SM_b20620 0.46 -0.9
1,639,977 - SM_b20620 0.52 -2.3
1,639,982 + SM_b20620 0.53 -2.4
1,639,983 - SM_b20620 0.53 -0.8
1,639,983 - SM_b20620 0.53 -0.3
1,640,176 - SM_b20620 0.71 -2.4
1,640,201 - SM_b20620 0.74 -1.7
1,640,218 - SM_b20620 0.75 +1.2
1,640,218 - SM_b20620 0.75 -1.2
1,640,306 + SM_b20620 0.84 -1.2
1,640,307 - SM_b20620 0.84 +0.3
1,640,336 + SM_b20620 0.87 -0.7
1,640,468 - -0.4
1,640,555 - +2.0
1,640,604 + -0.1
1,640,604 + +0.2
1,640,607 + -0.2
1,640,607 + -0.5
1,640,607 + -0.3
1,640,608 - +2.7
1,640,640 - SM_b20621 0.12 -0.3
1,640,640 - SM_b20621 0.12 -1.5
1,640,640 - SM_b20621 0.12 -0.3
1,640,806 + SM_b20621 0.30 -1.8
1,640,833 - SM_b20621 0.32 +0.7
1,640,847 + SM_b20621 0.34 -0.5
1,640,847 + SM_b20621 0.34 -0.8
1,640,905 - SM_b20621 0.40 +1.2
1,640,909 + SM_b20621 0.40 -1.3
1,640,909 + SM_b20621 0.40 -0.6
1,640,909 + SM_b20621 0.40 +0.1
1,640,909 + SM_b20621 0.40 -1.4
1,640,910 - SM_b20621 0.41 +0.0
1,640,951 + SM_b20621 0.45 +1.2
1,641,236 + SM_b20621 0.75 -1.2
1,641,237 - SM_b20621 0.75 -1.2
1,641,237 - SM_b20621 0.75 -0.3
1,641,282 + SM_b20621 0.79 -0.5
1,641,282 + SM_b20621 0.79 +0.5
1,641,282 + SM_b20621 0.79 +4.5
1,641,282 + SM_b20621 0.79 -0.1
1,641,283 - SM_b20621 0.80 -2.1
1,641,283 - SM_b20621 0.80 +0.1
1,641,283 - SM_b20621 0.80 +1.2

Or see this region's nucleotide sequence