Experiment: Thallium(I) acetate 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20586 and SM_b20587 are separated by 130 nucleotides SM_b20587 and SM_b20588 are separated by 13 nucleotides SM_b20588 and SM_b20589 overlap by 1 nucleotides
SM_b20586: SM_b20586 - IclR family transcriptional regulator, at 1,601,452 to 1,602,207
_b20586
SM_b20587: SM_b20587 - CoA-transferase subunit A protein, at 1,602,338 to 1,603,198
_b20587
SM_b20588: SM_b20588 - CoA-transferase subunit B protein, at 1,603,212 to 1,603,997
_b20588
SM_b20589: SM_b20589 - beta-ketoadipyl CoA thiolase, at 1,603,997 to 1,605,199
_b20589
Position (kb)
1602
1603
1604 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1601.802 kb on - strand, within SM_b20586 at 1601.871 kb on - strand, within SM_b20586 at 1601.942 kb on + strand, within SM_b20586 at 1601.943 kb on - strand, within SM_b20586 at 1601.943 kb on - strand, within SM_b20586 at 1601.955 kb on + strand, within SM_b20586 at 1601.981 kb on + strand, within SM_b20586 at 1601.982 kb on - strand, within SM_b20586 at 1601.982 kb on - strand, within SM_b20586 at 1601.982 kb on - strand, within SM_b20586 at 1602.211 kb on - strand at 1602.307 kb on + strand at 1602.307 kb on + strand at 1602.370 kb on - strand at 1602.370 kb on - strand at 1602.394 kb on + strand at 1602.432 kb on - strand, within SM_b20587 at 1602.506 kb on + strand, within SM_b20587 at 1602.507 kb on - strand, within SM_b20587 at 1602.668 kb on + strand, within SM_b20587 at 1602.669 kb on - strand, within SM_b20587 at 1602.714 kb on - strand, within SM_b20587 at 1602.733 kb on + strand, within SM_b20587 at 1602.733 kb on + strand, within SM_b20587 at 1602.748 kb on + strand, within SM_b20587 at 1603.034 kb on + strand, within SM_b20587 at 1603.035 kb on - strand, within SM_b20587 at 1603.046 kb on + strand, within SM_b20587 at 1603.046 kb on + strand, within SM_b20587 at 1603.047 kb on - strand, within SM_b20587 at 1603.049 kb on + strand, within SM_b20587 at 1603.050 kb on - strand, within SM_b20587 at 1603.070 kb on + strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.359 kb on + strand, within SM_b20588 at 1603.359 kb on + strand, within SM_b20588 at 1603.360 kb on - strand, within SM_b20588 at 1603.423 kb on + strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.424 kb on - strand, within SM_b20588 at 1603.470 kb on + strand, within SM_b20588 at 1603.545 kb on - strand, within SM_b20588 at 1603.563 kb on + strand, within SM_b20588 at 1603.564 kb on - strand, within SM_b20588 at 1604.009 kb on + strand at 1604.011 kb on + strand at 1604.011 kb on + strand at 1604.011 kb on + strand at 1604.012 kb on - strand at 1604.012 kb on - strand at 1604.012 kb on - strand at 1604.021 kb on + strand at 1604.021 kb on + strand at 1604.023 kb on + strand at 1604.023 kb on + strand at 1604.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml remove 1,601,802 - SM_b20586 0.46 -3.7 1,601,871 - SM_b20586 0.55 +0.5 1,601,942 + SM_b20586 0.65 -0.2 1,601,943 - SM_b20586 0.65 -2.3 1,601,943 - SM_b20586 0.65 -1.0 1,601,955 + SM_b20586 0.67 -0.3 1,601,981 + SM_b20586 0.70 -0.1 1,601,982 - SM_b20586 0.70 -1.7 1,601,982 - SM_b20586 0.70 -0.2 1,601,982 - SM_b20586 0.70 -0.0 1,602,211 - -0.2 1,602,307 + -1.0 1,602,307 + -0.4 1,602,370 - -0.1 1,602,370 - -0.7 1,602,394 + -0.4 1,602,432 - SM_b20587 0.11 -0.4 1,602,506 + SM_b20587 0.20 -0.9 1,602,507 - SM_b20587 0.20 -1.0 1,602,668 + SM_b20587 0.38 +0.1 1,602,669 - SM_b20587 0.38 +0.2 1,602,714 - SM_b20587 0.44 +0.2 1,602,733 + SM_b20587 0.46 +0.2 1,602,733 + SM_b20587 0.46 -0.8 1,602,748 + SM_b20587 0.48 +0.0 1,603,034 + SM_b20587 0.81 -0.2 1,603,035 - SM_b20587 0.81 -3.0 1,603,046 + SM_b20587 0.82 -0.3 1,603,046 + SM_b20587 0.82 -0.3 1,603,047 - SM_b20587 0.82 +1.7 1,603,049 + SM_b20587 0.83 -0.6 1,603,050 - SM_b20587 0.83 -0.3 1,603,070 + SM_b20587 0.85 +0.9 1,603,071 - SM_b20587 0.85 -0.5 1,603,071 - SM_b20587 0.85 -2.8 1,603,071 - SM_b20587 0.85 -0.8 1,603,071 - SM_b20587 0.85 -1.2 1,603,359 + SM_b20588 0.19 -0.5 1,603,359 + SM_b20588 0.19 -0.7 1,603,360 - SM_b20588 0.19 -0.5 1,603,423 + SM_b20588 0.27 +1.7 1,603,424 - SM_b20588 0.27 -1.0 1,603,424 - SM_b20588 0.27 +0.7 1,603,424 - SM_b20588 0.27 -0.3 1,603,424 - SM_b20588 0.27 -0.5 1,603,424 - SM_b20588 0.27 +0.1 1,603,470 + SM_b20588 0.33 -0.1 1,603,545 - SM_b20588 0.42 -1.2 1,603,563 + SM_b20588 0.45 -0.7 1,603,564 - SM_b20588 0.45 -1.0 1,604,009 + -2.8 1,604,011 + +0.2 1,604,011 + +0.3 1,604,011 + -0.9 1,604,012 - +2.2 1,604,012 - +0.5 1,604,012 - -0.4 1,604,021 + -1.1 1,604,021 + +0.9 1,604,023 + -0.8 1,604,023 + +0.7 1,604,024 - +0.2
Or see this region's nucleotide sequence