Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20080

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20079 and SM_b20080 are separated by 114 nucleotidesSM_b20080 and SM_b20081 are separated by 19 nucleotidesSM_b20081 and SM_b20082 overlap by 4 nucleotides SM_b20079: SM_b20079 - hemolysin-adenlyate cyclase, at 88,213 to 91,431 _b20079 SM_b20080: SM_b20080 - alcohol dehydrogenase, at 91,546 to 92,715 _b20080 SM_b20081: SM_b20081 - hypothetical protein, at 92,735 to 93,445 _b20081 SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260 _b20082 Position (kb) 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 90.546 kb on + strand, within SM_b20079at 90.547 kb on - strand, within SM_b20079at 90.597 kb on + strand, within SM_b20079at 90.597 kb on + strand, within SM_b20079at 90.597 kb on + strand, within SM_b20079at 90.598 kb on - strand, within SM_b20079at 90.789 kb on + strand, within SM_b20079at 90.789 kb on + strand, within SM_b20079at 90.789 kb on + strand, within SM_b20079at 90.790 kb on - strand, within SM_b20079at 90.907 kb on + strand, within SM_b20079at 90.955 kb on + strand, within SM_b20079at 90.956 kb on - strand, within SM_b20079at 90.956 kb on - strand, within SM_b20079at 90.956 kb on - strand, within SM_b20079at 90.957 kb on + strand, within SM_b20079at 90.957 kb on + strand, within SM_b20079at 90.958 kb on - strand, within SM_b20079at 90.958 kb on - strand, within SM_b20079at 91.252 kb on + strandat 91.253 kb on - strandat 91.253 kb on - strandat 91.303 kb on + strandat 91.327 kb on + strandat 91.327 kb on + strandat 91.328 kb on - strandat 91.331 kb on - strandat 91.674 kb on + strand, within SM_b20080at 91.951 kb on - strand, within SM_b20080at 91.951 kb on - strand, within SM_b20080at 91.970 kb on - strand, within SM_b20080at 92.251 kb on + strand, within SM_b20080at 92.252 kb on - strand, within SM_b20080at 92.252 kb on - strand, within SM_b20080at 92.269 kb on + strand, within SM_b20080at 92.269 kb on + strand, within SM_b20080at 92.499 kb on - strand, within SM_b20080at 92.563 kb on + strand, within SM_b20080at 92.563 kb on + strand, within SM_b20080at 92.659 kb on + strandat 92.829 kb on + strand, within SM_b20081at 92.830 kb on - strand, within SM_b20081at 93.089 kb on - strand, within SM_b20081at 93.089 kb on - strand, within SM_b20081at 93.089 kb on - strand, within SM_b20081at 93.379 kb on + strandat 93.382 kb on - strandat 93.382 kb on - strandat 93.382 kb on - strandat 93.404 kb on + strandat 93.404 kb on + strandat 93.404 kb on + strandat 93.404 kb on + strandat 93.405 kb on - strandat 93.454 kb on - strandat 93.542 kb on + strand, within SM_b20082at 93.543 kb on - strand, within SM_b20082at 93.713 kb on + strand, within SM_b20082at 93.713 kb on + strand, within SM_b20082

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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90,546 + SM_b20079 0.72 +0.5
90,547 - SM_b20079 0.73 -2.3
90,597 + SM_b20079 0.74 +0.3
90,597 + SM_b20079 0.74 -0.5
90,597 + SM_b20079 0.74 -0.8
90,598 - SM_b20079 0.74 +0.7
90,789 + SM_b20079 0.80 +0.3
90,789 + SM_b20079 0.80 +0.3
90,789 + SM_b20079 0.80 -0.2
90,790 - SM_b20079 0.80 +0.7
90,907 + SM_b20079 0.84 +1.2
90,955 + SM_b20079 0.85 +0.2
90,956 - SM_b20079 0.85 -0.4
90,956 - SM_b20079 0.85 -3.3
90,956 - SM_b20079 0.85 +0.9
90,957 + SM_b20079 0.85 +0.3
90,957 + SM_b20079 0.85 +1.4
90,958 - SM_b20079 0.85 -0.9
90,958 - SM_b20079 0.85 +1.2
91,252 + -3.2
91,253 - -1.4
91,253 - -1.4
91,303 + -2.5
91,327 + +1.0
91,327 + -0.8
91,328 - +1.7
91,331 - -0.5
91,674 + SM_b20080 0.11 -0.7
91,951 - SM_b20080 0.35 +0.5
91,951 - SM_b20080 0.35 -2.5
91,970 - SM_b20080 0.36 -0.4
92,251 + SM_b20080 0.60 -0.2
92,252 - SM_b20080 0.60 -0.7
92,252 - SM_b20080 0.60 -0.9
92,269 + SM_b20080 0.62 -0.2
92,269 + SM_b20080 0.62 +0.7
92,499 - SM_b20080 0.81 +1.4
92,563 + SM_b20080 0.87 -0.7
92,563 + SM_b20080 0.87 +1.8
92,659 + +1.0
92,829 + SM_b20081 0.13 +0.3
92,830 - SM_b20081 0.13 +0.8
93,089 - SM_b20081 0.50 +0.3
93,089 - SM_b20081 0.50 +1.1
93,089 - SM_b20081 0.50 +2.5
93,379 + -0.5
93,382 - -3.2
93,382 - +1.2
93,382 - -0.3
93,404 + -0.6
93,404 + +0.1
93,404 + -0.4
93,404 + -0.7
93,405 - -0.6
93,454 - -2.5
93,542 + SM_b20082 0.12 -0.1
93,543 - SM_b20082 0.12 +1.1
93,713 + SM_b20082 0.33 +0.5
93,713 + SM_b20082 0.33 -3.2

Or see this region's nucleotide sequence