Experiment: nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_779 and Pf1N1B4_780 are separated by 621 nucleotides Pf1N1B4_780 and Pf1N1B4_781 are separated by 188 nucleotides
Pf1N1B4_779 - hypothetical protein, at 883,677 to 884,372
_779
Pf1N1B4_780 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 884,994 to 885,350
_780
Pf1N1B4_781 - hydrolase, alpha/beta fold family, at 885,539 to 886,582
_781
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 884.015 kb on + strand, within Pf1N1B4_779 at 884.015 kb on + strand, within Pf1N1B4_779 at 884.016 kb on - strand, within Pf1N1B4_779 at 884.017 kb on + strand at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.059 kb on + strand, within Pf1N1B4_779 at 884.060 kb on - strand, within Pf1N1B4_779 at 884.162 kb on + strand, within Pf1N1B4_779 at 884.355 kb on + strand at 884.355 kb on + strand at 884.355 kb on + strand at 884.385 kb on + strand at 884.386 kb on - strand at 884.386 kb on - strand at 884.391 kb on + strand at 884.391 kb on + strand at 884.391 kb on + strand at 884.391 kb on + strand at 884.391 kb on + strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.394 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.488 kb on + strand at 884.488 kb on + strand at 884.489 kb on - strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.516 kb on - strand at 884.516 kb on - strand at 884.516 kb on - strand at 884.652 kb on + strand at 884.662 kb on + strand at 884.668 kb on + strand at 884.683 kb on - strand at 884.683 kb on - strand at 884.704 kb on + strand at 884.704 kb on + strand at 884.791 kb on - strand at 884.791 kb on - strand at 884.794 kb on - strand at 884.803 kb on - strand at 884.859 kb on + strand at 884.859 kb on + strand at 884.859 kb on + strand at 884.860 kb on - strand at 884.860 kb on - strand at 884.860 kb on - strand at 884.901 kb on + strand at 884.915 kb on + strand at 884.918 kb on + strand at 884.918 kb on + strand at 884.918 kb on + strand at 884.918 kb on + strand at 884.918 kb on + strand at 884.919 kb on - strand at 884.919 kb on - strand at 884.948 kb on + strand at 884.949 kb on - strand at 884.949 kb on - strand at 884.949 kb on - strand at 884.973 kb on - strand at 884.975 kb on + strand at 885.096 kb on + strand, within Pf1N1B4_780 at 885.099 kb on + strand, within Pf1N1B4_780 at 885.099 kb on + strand, within Pf1N1B4_780 at 885.150 kb on + strand, within Pf1N1B4_780 at 885.150 kb on + strand, within Pf1N1B4_780 at 885.151 kb on - strand, within Pf1N1B4_780 at 885.151 kb on - strand, within Pf1N1B4_780 at 885.348 kb on + strand at 885.348 kb on + strand at 885.365 kb on + strand at 885.365 kb on + strand at 885.366 kb on - strand at 885.443 kb on + strand at 885.444 kb on - strand at 885.612 kb on + strand at 885.612 kb on + strand at 885.720 kb on - strand, within Pf1N1B4_781 at 885.870 kb on + strand, within Pf1N1B4_781 at 885.870 kb on + strand, within Pf1N1B4_781 at 885.870 kb on + strand, within Pf1N1B4_781 at 885.870 kb on + strand, within Pf1N1B4_781 at 885.871 kb on - strand, within Pf1N1B4_781 at 885.871 kb on - strand, within Pf1N1B4_781 at 886.099 kb on + strand, within Pf1N1B4_781 at 886.099 kb on + strand, within Pf1N1B4_781 at 886.099 kb on + strand, within Pf1N1B4_781 at 886.099 kb on + strand, within Pf1N1B4_781 at 886.314 kb on + strand, within Pf1N1B4_781
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 100 mM remove 884,015 + Pf1N1B4_779 0.49 +1.1 884,015 + Pf1N1B4_779 0.49 -0.3 884,016 - Pf1N1B4_779 0.49 -1.1 884,017 + -0.5 884,017 + Pf1N1B4_779 0.49 +1.1 884,017 + Pf1N1B4_779 0.49 +0.1 884,017 + Pf1N1B4_779 0.49 -1.6 884,017 + Pf1N1B4_779 0.49 +0.5 884,017 + Pf1N1B4_779 0.49 -1.2 884,017 + Pf1N1B4_779 0.49 -0.5 884,017 + Pf1N1B4_779 0.49 +1.1 884,017 + Pf1N1B4_779 0.49 +0.5 884,017 + Pf1N1B4_779 0.49 +2.8 884,018 - Pf1N1B4_779 0.49 +0.1 884,018 - Pf1N1B4_779 0.49 -2.4 884,018 - Pf1N1B4_779 0.49 +1.1 884,018 - Pf1N1B4_779 0.49 -0.5 884,018 - Pf1N1B4_779 0.49 -1.2 884,018 - Pf1N1B4_779 0.49 -0.1 884,018 - Pf1N1B4_779 0.49 +0.4 884,018 - Pf1N1B4_779 0.49 +0.5 884,018 - Pf1N1B4_779 0.49 -0.2 884,018 - Pf1N1B4_779 0.49 +0.3 884,018 - Pf1N1B4_779 0.49 +0.7 884,018 - Pf1N1B4_779 0.49 +0.4 884,018 - Pf1N1B4_779 0.49 -0.1 884,018 - Pf1N1B4_779 0.49 +0.1 884,018 - Pf1N1B4_779 0.49 -1.5 884,059 + Pf1N1B4_779 0.55 -0.6 884,060 - Pf1N1B4_779 0.55 -2.4 884,162 + Pf1N1B4_779 0.70 -1.7 884,355 + -0.9 884,355 + -0.1 884,355 + -0.2 884,385 + +0.8 884,386 - +0.5 884,386 - +1.1 884,391 + +1.1 884,391 + -1.0 884,391 + +0.3 884,391 + +0.5 884,391 + -0.6 884,392 - -0.1 884,392 - -0.3 884,392 - -0.2 884,392 - +0.8 884,392 - +2.1 884,392 - +1.2 884,392 - +0.9 884,394 + +0.1 884,407 + +0.1 884,407 + +0.6 884,407 + +0.3 884,407 + +0.5 884,407 + -0.1 884,407 + -0.1 884,408 - +1.2 884,408 - +1.1 884,408 - -0.2 884,408 - -0.5 884,408 - +0.5 884,408 - -0.2 884,408 - -0.9 884,408 - -0.1 884,408 - +0.9 884,408 - -0.5 884,408 - +0.1 884,408 - -0.2 884,408 - +0.7 884,408 - -0.9 884,408 - +0.8 884,408 - +0.4 884,408 - +1.1 884,408 - +0.2 884,488 + -1.2 884,488 + +0.3 884,489 - -1.2 884,515 + +2.4 884,515 + +0.8 884,515 + -0.1 884,515 + +1.4 884,515 + +0.4 884,515 + +0.5 884,516 - -1.5 884,516 - -1.2 884,516 - +0.3 884,652 + +0.1 884,662 + -0.4 884,668 + -0.5 884,683 - +0.7 884,683 - -0.5 884,704 + -0.1 884,704 + -0.5 884,791 - -1.9 884,791 - -0.1 884,794 - -0.9 884,803 - -1.6 884,859 + +1.4 884,859 + +1.1 884,859 + +0.3 884,860 - -0.3 884,860 - -0.6 884,860 - -0.4 884,901 + +0.1 884,915 + -0.5 884,918 + -0.2 884,918 + -1.7 884,918 + +1.1 884,918 + +2.1 884,918 + +0.3 884,919 - -0.5 884,919 - +0.5 884,948 + +0.7 884,949 - +0.4 884,949 - +0.2 884,949 - +0.5 884,973 - -0.5 884,975 + +0.7 885,096 + Pf1N1B4_780 0.29 -0.2 885,099 + Pf1N1B4_780 0.29 -0.5 885,099 + Pf1N1B4_780 0.29 -2.5 885,150 + Pf1N1B4_780 0.44 -1.2 885,150 + Pf1N1B4_780 0.44 -1.5 885,151 - Pf1N1B4_780 0.44 -0.6 885,151 - Pf1N1B4_780 0.44 +0.7 885,348 + -0.5 885,348 + -0.8 885,365 + +0.1 885,365 + -1.5 885,366 - -1.5 885,443 + -1.5 885,444 - +1.5 885,612 + -0.2 885,612 + +1.4 885,720 - Pf1N1B4_781 0.17 -1.6 885,870 + Pf1N1B4_781 0.32 +0.3 885,870 + Pf1N1B4_781 0.32 +0.6 885,870 + Pf1N1B4_781 0.32 -0.1 885,870 + Pf1N1B4_781 0.32 +0.5 885,871 - Pf1N1B4_781 0.32 -1.1 885,871 - Pf1N1B4_781 0.32 -0.9 886,099 + Pf1N1B4_781 0.54 +0.0 886,099 + Pf1N1B4_781 0.54 +1.5 886,099 + Pf1N1B4_781 0.54 -0.8 886,099 + Pf1N1B4_781 0.54 -0.5 886,314 + Pf1N1B4_781 0.74 +0.5
Or see this region's nucleotide sequence