Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_569

Experiment: nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_567 and Pf1N1B4_568 are separated by 133 nucleotidesPf1N1B4_568 and Pf1N1B4_569 overlap by 4 nucleotidesPf1N1B4_569 and Pf1N1B4_570 are separated by 172 nucleotidesPf1N1B4_570 and Pf1N1B4_571 are separated by 191 nucleotides Pf1N1B4_567 - Histone acetyltransferase HPA2 and related acetyltransferases, at 662,801 to 663,220 _567 Pf1N1B4_568 - Peptide deformylase (EC 3.5.1.88), at 663,354 to 663,893 _568 Pf1N1B4_569 - Ribonuclease BN (EC 3.1.-.-), at 663,890 to 664,834 _569 Pf1N1B4_570 - hypothetical protein, at 665,007 to 665,198 _570 Pf1N1B4_571 - FIG00954271: hypothetical protein, at 665,390 to 665,767 _571 Position (kb) 663 664 665Strain fitness (log2 ratio) -2 -1 0 1 2 3at 662.943 kb on + strandat 662.943 kb on + strand, within Pf1N1B4_567at 662.943 kb on + strand, within Pf1N1B4_567at 662.943 kb on + strand, within Pf1N1B4_567at 663.102 kb on - strandat 663.102 kb on - strand, within Pf1N1B4_567at 663.102 kb on - strand, within Pf1N1B4_567at 663.118 kb on + strand, within Pf1N1B4_567at 663.119 kb on - strand, within Pf1N1B4_567at 663.277 kb on - strandat 663.439 kb on - strand, within Pf1N1B4_568at 664.060 kb on + strand, within Pf1N1B4_569at 664.061 kb on - strandat 664.061 kb on - strand, within Pf1N1B4_569at 664.062 kb on + strand, within Pf1N1B4_569at 664.063 kb on - strand, within Pf1N1B4_569at 664.063 kb on - strand, within Pf1N1B4_569at 664.063 kb on - strand, within Pf1N1B4_569at 664.063 kb on - strandat 664.063 kb on - strand, within Pf1N1B4_569at 664.069 kb on - strand, within Pf1N1B4_569at 664.104 kb on + strand, within Pf1N1B4_569at 664.104 kb on + strandat 664.105 kb on - strand, within Pf1N1B4_569at 664.105 kb on - strand, within Pf1N1B4_569at 664.117 kb on - strand, within Pf1N1B4_569at 664.117 kb on - strandat 664.137 kb on + strand, within Pf1N1B4_569at 664.137 kb on + strandat 664.138 kb on - strand, within Pf1N1B4_569at 664.202 kb on - strand, within Pf1N1B4_569at 664.268 kb on + strand, within Pf1N1B4_569at 664.416 kb on + strandat 664.470 kb on + strand, within Pf1N1B4_569at 664.471 kb on - strand, within Pf1N1B4_569at 664.471 kb on - strand, within Pf1N1B4_569at 664.471 kb on - strand, within Pf1N1B4_569at 664.746 kb on + strandat 664.746 kb on + strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.747 kb on - strandat 664.783 kb on + strandat 664.784 kb on - strandat 664.892 kb on + strandat 664.892 kb on + strandat 664.907 kb on + strandat 664.907 kb on + strandat 664.907 kb on + strandat 664.907 kb on + strandat 664.907 kb on + strandat 664.936 kb on + strandat 664.936 kb on + strandat 664.936 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 664.938 kb on + strandat 665.009 kb on - strandat 665.180 kb on + strandat 665.201 kb on + strandat 665.201 kb on + strandat 665.202 kb on - strandat 665.278 kb on + strandat 665.282 kb on + strandat 665.282 kb on + strandat 665.283 kb on - strandat 665.305 kb on + strandat 665.312 kb on + strandat 665.313 kb on - strandat 665.347 kb on + strandat 665.347 kb on + strandat 665.347 kb on + strandat 665.347 kb on + strandat 665.347 kb on + strandat 665.348 kb on - strandat 665.497 kb on + strand, within Pf1N1B4_571at 665.498 kb on - strand, within Pf1N1B4_571at 665.498 kb on - strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.599 kb on + strand, within Pf1N1B4_571at 665.600 kb on - strandat 665.600 kb on - strand, within Pf1N1B4_571at 665.600 kb on - strand, within Pf1N1B4_571at 665.600 kb on - strand, within Pf1N1B4_571at 665.708 kb on + strand, within Pf1N1B4_571at 665.709 kb on - strand, within Pf1N1B4_571at 665.709 kb on - strand, within Pf1N1B4_571

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 100 mM
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662,943 + -0.6
662,943 + Pf1N1B4_567 0.34 -0.6
662,943 + Pf1N1B4_567 0.34 +0.4
662,943 + Pf1N1B4_567 0.34 -0.8
663,102 - +1.0
663,102 - Pf1N1B4_567 0.72 -1.5
663,102 - Pf1N1B4_567 0.72 -2.3
663,118 + Pf1N1B4_567 0.75 -1.8
663,119 - Pf1N1B4_567 0.76 +0.8
663,277 - -0.6
663,439 - Pf1N1B4_568 0.16 -1.0
664,060 + Pf1N1B4_569 0.18 -0.6
664,061 - -0.6
664,061 - Pf1N1B4_569 0.18 +0.6
664,062 + Pf1N1B4_569 0.18 +0.1
664,063 - Pf1N1B4_569 0.18 -1.0
664,063 - Pf1N1B4_569 0.18 +0.7
664,063 - Pf1N1B4_569 0.18 -0.4
664,063 - +1.0
664,063 - Pf1N1B4_569 0.18 +0.2
664,069 - Pf1N1B4_569 0.19 -0.6
664,104 + Pf1N1B4_569 0.23 -1.0
664,104 + -0.6
664,105 - Pf1N1B4_569 0.23 +0.2
664,105 - Pf1N1B4_569 0.23 +1.0
664,117 - Pf1N1B4_569 0.24 -1.6
664,117 - -0.0
664,137 + Pf1N1B4_569 0.26 -0.6
664,137 + -0.6
664,138 - Pf1N1B4_569 0.26 -2.0
664,202 - Pf1N1B4_569 0.33 +1.0
664,268 + Pf1N1B4_569 0.40 -1.0
664,416 + +1.0
664,470 + Pf1N1B4_569 0.61 +0.6
664,471 - Pf1N1B4_569 0.61 +0.6
664,471 - Pf1N1B4_569 0.61 +3.3
664,471 - Pf1N1B4_569 0.61 -1.6
664,746 + +0.5
664,746 + +1.0
664,747 - -1.8
664,747 - -0.6
664,747 - +0.6
664,747 - -1.0
664,747 - +1.0
664,747 - +2.0
664,747 - +0.4
664,747 - -1.8
664,783 + -0.6
664,784 - +1.0
664,892 + +1.0
664,892 + -0.6
664,907 + +0.2
664,907 + -0.6
664,907 + -0.6
664,907 + -0.0
664,907 + -1.0
664,936 + +0.6
664,936 + -1.2
664,936 + -1.6
664,938 + -0.1
664,938 + +0.2
664,938 + +2.0
664,938 + -1.4
664,938 + +0.6
664,938 + -1.4
664,938 + -1.4
665,009 - +0.7
665,180 + -0.0
665,201 + -2.0
665,201 + +0.3
665,202 - -0.2
665,278 + -0.0
665,282 + -1.0
665,282 + +1.0
665,283 - -0.6
665,305 + -0.0
665,312 + -0.0
665,313 - -0.5
665,347 + -0.0
665,347 + +0.4
665,347 + -0.3
665,347 + +0.9
665,347 + -1.2
665,348 - -1.8
665,497 + Pf1N1B4_571 0.28 +0.4
665,498 - Pf1N1B4_571 0.29 +0.6
665,498 - Pf1N1B4_571 0.29 -0.1
665,599 + Pf1N1B4_571 0.55 -0.3
665,599 + Pf1N1B4_571 0.55 -0.0
665,599 + Pf1N1B4_571 0.55 +0.3
665,599 + Pf1N1B4_571 0.55 -0.8
665,599 + Pf1N1B4_571 0.55 -1.6
665,599 + Pf1N1B4_571 0.55 +0.8
665,599 + Pf1N1B4_571 0.55 -0.0
665,599 + Pf1N1B4_571 0.55 -0.0
665,600 - +1.0
665,600 - Pf1N1B4_571 0.56 +1.0
665,600 - Pf1N1B4_571 0.56 +0.6
665,600 - Pf1N1B4_571 0.56 -1.4
665,708 + Pf1N1B4_571 0.84 -0.6
665,709 - Pf1N1B4_571 0.84 +0.1
665,709 - Pf1N1B4_571 0.84 -0.0

Or see this region's nucleotide sequence