Experiment: nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4149 and Pf1N1B4_4150 are separated by 257 nucleotides
Pf1N1B4_4149 - Probable lipoprotein signal peptide, at 4,594,744 to 4,595,796
_4149
Pf1N1B4_4150 - Transcriptional regulator, AraC family, at 4,596,054 to 4,596,971
_4150
Position (kb)
4594
4595
4596 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4593.941 kb on + strand at 4593.972 kb on + strand at 4593.972 kb on + strand at 4594.196 kb on - strand at 4594.196 kb on - strand at 4594.232 kb on - strand at 4594.341 kb on + strand at 4594.342 kb on - strand at 4594.342 kb on - strand at 4594.342 kb on - strand at 4594.347 kb on + strand at 4594.347 kb on + strand at 4594.348 kb on - strand at 4594.421 kb on - strand at 4594.487 kb on + strand at 4594.499 kb on - strand at 4594.597 kb on - strand at 4594.597 kb on - strand at 4594.597 kb on - strand at 4594.597 kb on - strand at 4594.597 kb on - strand at 4594.665 kb on - strand at 4594.680 kb on + strand at 4594.680 kb on + strand at 4594.680 kb on + strand at 4594.680 kb on + strand at 4594.680 kb on + strand at 4594.680 kb on + strand at 4594.681 kb on - strand at 4594.681 kb on - strand at 4594.681 kb on - strand at 4594.681 kb on - strand at 4594.722 kb on + strand at 4594.723 kb on - strand at 4594.887 kb on + strand, within Pf1N1B4_4149 at 4594.887 kb on + strand, within Pf1N1B4_4149 at 4595.062 kb on + strand, within Pf1N1B4_4149 at 4595.062 kb on + strand, within Pf1N1B4_4149 at 4595.062 kb on + strand, within Pf1N1B4_4149 at 4595.063 kb on - strand, within Pf1N1B4_4149 at 4595.132 kb on + strand, within Pf1N1B4_4149 at 4595.342 kb on - strand, within Pf1N1B4_4149 at 4595.365 kb on - strand at 4595.375 kb on + strand at 4595.495 kb on + strand at 4595.495 kb on + strand, within Pf1N1B4_4149 at 4595.496 kb on - strand, within Pf1N1B4_4149 at 4595.496 kb on - strand, within Pf1N1B4_4149 at 4595.496 kb on - strand, within Pf1N1B4_4149 at 4595.723 kb on + strand at 4595.740 kb on - strand at 4595.740 kb on - strand at 4595.795 kb on - strand at 4595.795 kb on - strand at 4595.795 kb on - strand at 4595.872 kb on + strand at 4595.872 kb on + strand at 4595.873 kb on - strand at 4595.873 kb on - strand at 4595.873 kb on - strand at 4595.876 kb on - strand at 4595.893 kb on + strand at 4595.894 kb on - strand at 4595.894 kb on - strand at 4595.945 kb on + strand at 4595.945 kb on + strand at 4595.977 kb on + strand at 4595.978 kb on - strand at 4595.978 kb on - strand at 4595.992 kb on + strand at 4595.993 kb on - strand at 4595.996 kb on + strand at 4595.996 kb on + strand at 4595.996 kb on + strand at 4595.997 kb on - strand at 4595.997 kb on - strand at 4596.001 kb on + strand at 4596.007 kb on + strand at 4596.008 kb on - strand at 4596.010 kb on + strand at 4596.019 kb on - strand at 4596.019 kb on - strand at 4596.029 kb on - strand at 4596.406 kb on + strand, within Pf1N1B4_4150 at 4596.445 kb on + strand, within Pf1N1B4_4150 at 4596.445 kb on + strand, within Pf1N1B4_4150 at 4596.446 kb on - strand, within Pf1N1B4_4150 at 4596.446 kb on - strand, within Pf1N1B4_4150 at 4596.446 kb on - strand, within Pf1N1B4_4150 at 4596.655 kb on + strand, within Pf1N1B4_4150 at 4596.721 kb on + strand, within Pf1N1B4_4150 at 4596.721 kb on + strand, within Pf1N1B4_4150 at 4596.722 kb on - strand, within Pf1N1B4_4150
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 100 mM remove 4,593,941 + +0.2 4,593,972 + -0.2 4,593,972 + -0.3 4,594,196 - -0.8 4,594,196 - +0.4 4,594,232 - +0.5 4,594,341 + -0.5 4,594,342 - -0.8 4,594,342 - -1.1 4,594,342 - +2.8 4,594,347 + -1.2 4,594,347 + +0.3 4,594,348 - +1.8 4,594,421 - +0.4 4,594,487 + -0.2 4,594,499 - -0.6 4,594,597 - +0.8 4,594,597 - +0.8 4,594,597 - +1.8 4,594,597 - -0.2 4,594,597 - +1.8 4,594,665 - +0.3 4,594,680 + +0.1 4,594,680 + -1.1 4,594,680 + +0.3 4,594,680 + -0.1 4,594,680 + -1.6 4,594,680 + -0.1 4,594,681 - +0.6 4,594,681 - -1.2 4,594,681 - -0.2 4,594,681 - -0.9 4,594,722 + -0.2 4,594,723 - +0.3 4,594,887 + Pf1N1B4_4149 0.14 -0.8 4,594,887 + Pf1N1B4_4149 0.14 -0.6 4,595,062 + Pf1N1B4_4149 0.30 +1.5 4,595,062 + Pf1N1B4_4149 0.30 -0.8 4,595,062 + Pf1N1B4_4149 0.30 -0.2 4,595,063 - Pf1N1B4_4149 0.30 -0.2 4,595,132 + Pf1N1B4_4149 0.37 -2.4 4,595,342 - Pf1N1B4_4149 0.57 -0.7 4,595,365 - -0.2 4,595,375 + +0.2 4,595,495 + +0.8 4,595,495 + Pf1N1B4_4149 0.71 -2.1 4,595,496 - Pf1N1B4_4149 0.71 -1.1 4,595,496 - Pf1N1B4_4149 0.71 -1.6 4,595,496 - Pf1N1B4_4149 0.71 -1.4 4,595,723 + +0.8 4,595,740 - -0.8 4,595,740 - -1.9 4,595,795 - -2.1 4,595,795 - -0.2 4,595,795 - +0.2 4,595,872 + +0.8 4,595,872 + -0.8 4,595,873 - -0.2 4,595,873 - -0.5 4,595,873 - -0.1 4,595,876 - -0.8 4,595,893 + -1.4 4,595,894 - +0.2 4,595,894 - -1.1 4,595,945 + -1.6 4,595,945 + -0.7 4,595,977 + +0.8 4,595,978 - -0.2 4,595,978 - +0.6 4,595,992 + -0.8 4,595,993 - -1.8 4,595,996 + +0.5 4,595,996 + +0.6 4,595,996 + -0.6 4,595,997 - +0.8 4,595,997 - -0.1 4,596,001 + +0.0 4,596,007 + +2.8 4,596,008 - -1.6 4,596,010 + -1.1 4,596,019 - +0.0 4,596,019 - -1.8 4,596,029 - -1.1 4,596,406 + Pf1N1B4_4150 0.38 -2.4 4,596,445 + Pf1N1B4_4150 0.43 -1.7 4,596,445 + Pf1N1B4_4150 0.43 +1.2 4,596,446 - Pf1N1B4_4150 0.43 -1.2 4,596,446 - Pf1N1B4_4150 0.43 +0.0 4,596,446 - Pf1N1B4_4150 0.43 -1.6 4,596,655 + Pf1N1B4_4150 0.65 -0.2 4,596,721 + Pf1N1B4_4150 0.73 +0.3 4,596,721 + Pf1N1B4_4150 0.73 +0.9 4,596,722 - Pf1N1B4_4150 0.73 -1.6
Or see this region's nucleotide sequence