Experiment: nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2917 and Pf1N1B4_2918 are separated by 235 nucleotides Pf1N1B4_2918 and Pf1N1B4_2919 overlap by 4 nucleotides
Pf1N1B4_2917 - FIG140336: TPR domain protein, at 3,274,305 to 3,276,029
_2917
Pf1N1B4_2918 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 3,276,265 to 3,277,554
_2918
Pf1N1B4_2919 - Peptide chain release factor 1, at 3,277,551 to 3,278,633
_2919
Position (kb)
3276
3277
3278 Strain fitness (log2 ratio)
-1
0
1
2 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.612 kb on - strand, within Pf1N1B4_2917 at 3275.790 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.810 kb on - strand, within Pf1N1B4_2917 at 3275.900 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.024 kb on - strand at 3276.030 kb on - strand at 3276.030 kb on - strand at 3276.032 kb on - strand at 3276.032 kb on - strand at 3276.032 kb on - strand at 3276.090 kb on + strand at 3276.090 kb on + strand at 3276.090 kb on + strand at 3276.091 kb on - strand at 3276.190 kb on + strand at 3276.190 kb on + strand at 3276.190 kb on + strand at 3276.190 kb on + strand at 3276.191 kb on - strand at 3276.191 kb on - strand at 3276.191 kb on - strand at 3276.191 kb on - strand at 3276.434 kb on + strand, within Pf1N1B4_2918 at 3277.527 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 100 mM remove 3,275,612 - Pf1N1B4_2917 0.76 +1.6 3,275,612 - Pf1N1B4_2917 0.76 -0.7 3,275,612 - Pf1N1B4_2917 0.76 +0.2 3,275,612 - Pf1N1B4_2917 0.76 +1.6 3,275,612 - Pf1N1B4_2917 0.76 +2.2 3,275,612 - Pf1N1B4_2917 0.76 +0.4 3,275,612 - Pf1N1B4_2917 0.76 +1.2 3,275,612 - Pf1N1B4_2917 0.76 +2.6 3,275,612 - Pf1N1B4_2917 0.76 -0.2 3,275,612 - Pf1N1B4_2917 0.76 +0.6 3,275,612 - Pf1N1B4_2917 0.76 +2.5 3,275,612 - Pf1N1B4_2917 0.76 -0.0 3,275,612 - Pf1N1B4_2917 0.76 +0.5 3,275,790 - Pf1N1B4_2917 0.86 -0.2 3,275,810 - Pf1N1B4_2917 0.87 +0.8 3,275,810 - Pf1N1B4_2917 0.87 +1.8 3,275,810 - Pf1N1B4_2917 0.87 +0.7 3,275,810 - Pf1N1B4_2917 0.87 +0.2 3,275,810 - Pf1N1B4_2917 0.87 +1.2 3,275,810 - Pf1N1B4_2917 0.87 +1.5 3,275,810 - Pf1N1B4_2917 0.87 -1.1 3,275,810 - Pf1N1B4_2917 0.87 -0.1 3,275,810 - Pf1N1B4_2917 0.87 +1.2 3,275,810 - Pf1N1B4_2917 0.87 +1.2 3,275,810 - Pf1N1B4_2917 0.87 +0.8 3,275,810 - Pf1N1B4_2917 0.87 +0.5 3,275,810 - Pf1N1B4_2917 0.87 -0.0 3,275,810 - Pf1N1B4_2917 0.87 +2.2 3,275,810 - Pf1N1B4_2917 0.87 +1.9 3,275,810 - Pf1N1B4_2917 0.87 +1.8 3,275,810 - Pf1N1B4_2917 0.87 +0.5 3,275,900 - +0.7 3,276,024 - +1.2 3,276,024 - +1.2 3,276,024 - -0.8 3,276,024 - +0.3 3,276,024 - +1.6 3,276,024 - -0.8 3,276,024 - +0.3 3,276,024 - +0.4 3,276,024 - -0.4 3,276,024 - +0.6 3,276,024 - +0.2 3,276,024 - +0.2 3,276,024 - +1.6 3,276,024 - +0.4 3,276,024 - +1.8 3,276,024 - +0.2 3,276,024 - +2.2 3,276,024 - +0.6 3,276,024 - -1.1 3,276,024 - -0.8 3,276,024 - +0.5 3,276,024 - +2.1 3,276,024 - +0.4 3,276,024 - -0.4 3,276,024 - -0.4 3,276,024 - +0.7 3,276,024 - +0.2 3,276,024 - +0.2 3,276,024 - +1.5 3,276,024 - +1.2 3,276,030 - -1.0 3,276,030 - -0.1 3,276,032 - +2.2 3,276,032 - +0.6 3,276,032 - -0.1 3,276,090 + +0.6 3,276,090 + -0.6 3,276,090 + -1.4 3,276,091 - +0.6 3,276,190 + -0.8 3,276,190 + -0.4 3,276,190 + -1.1 3,276,190 + -0.2 3,276,191 - +0.2 3,276,191 - +0.5 3,276,191 - -0.4 3,276,191 - +0.5 3,276,434 + Pf1N1B4_2918 0.13 +1.0 3,277,527 + -1.0
Or see this region's nucleotide sequence