Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2207

Experiment: nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 100 mM
2,518,466	+		Pf1N1B4_2205	0.86	-0.4
2,518,466	+		Pf1N1B4_2205	0.86	+1.3
2,518,466	+		Pf1N1B4_2205	0.86	-1.3
2,518,467	-		Pf1N1B4_2205	0.86	-1.1
2,518,535	+				-0.7
2,518,535	+				-0.0
2,518,535	+				-1.6
2,518,535	+				-1.3
2,518,535	+				+0.5
2,518,535	+				+0.3
2,518,535	+				-0.3
2,518,536	-				+0.3
2,518,536	-				-1.1
2,518,536	-				+0.5
2,518,536	-				+0.3
2,518,573	+				-0.3
2,518,574	-				-0.3
2,518,600	+				-2.9
2,518,600	+				+0.0
2,518,601	-				-0.3
2,518,608	+				-0.7
2,518,609	-				-0.2
2,518,636	+				-1.5
2,518,636	+				-1.1
2,518,637	-				-1.3
2,518,637	-				-0.4
2,518,637	-				+0.7
2,518,686	+		Pf1N1B4_2206	0.11	-1.5
2,518,686	+		Pf1N1B4_2206	0.11	+0.7
2,518,686	+		Pf1N1B4_2206	0.11	-0.8
2,518,686	+		Pf1N1B4_2206	0.11	-0.6
2,518,687	-		Pf1N1B4_2206	0.11	+0.6
2,518,687	-		Pf1N1B4_2206	0.11	-0.4
2,518,687	-		Pf1N1B4_2206	0.11	-1.5
2,518,749	-		Pf1N1B4_2206	0.21	+0.3
2,518,779	+		Pf1N1B4_2206	0.25	-0.3
2,518,779	+		Pf1N1B4_2206	0.25	-1.5
2,518,779	+		Pf1N1B4_2206	0.25	+0.7
2,518,779	+		Pf1N1B4_2206	0.25	-0.7
2,518,780	-		Pf1N1B4_2206	0.25	+0.3
2,518,780	-		Pf1N1B4_2206	0.25	+0.7
2,518,780	-		Pf1N1B4_2206	0.25	+0.6
2,518,828	-		Pf1N1B4_2206	0.33	-1.5
2,518,888	-		Pf1N1B4_2206	0.42	-0.7
2,518,888	-		Pf1N1B4_2206	0.42	+1.3
2,518,993	+		Pf1N1B4_2206	0.59	-0.3
2,518,994	-				+1.3
2,518,994	-		Pf1N1B4_2206	0.59	+0.0
2,519,076	+		Pf1N1B4_2206	0.72	-1.0
2,519,076	+		Pf1N1B4_2206	0.72	-2.0
2,519,077	-		Pf1N1B4_2206	0.72	+0.7
2,519,097	+		Pf1N1B4_2206	0.76	-1.8
2,519,097	+				+0.3
2,519,097	+		Pf1N1B4_2206	0.76	-0.3
2,519,097	+		Pf1N1B4_2206	0.76	-0.3
2,519,097	+				+2.3
2,519,098	-		Pf1N1B4_2206	0.76	-0.9
2,519,098	-		Pf1N1B4_2206	0.76	-0.7
2,519,098	-		Pf1N1B4_2206	0.76	-1.5
2,519,098	-				+1.3
2,519,126	+		Pf1N1B4_2206	0.80	-0.3
2,519,126	+		Pf1N1B4_2206	0.80	+0.6
2,519,127	-				+2.1
2,519,127	-		Pf1N1B4_2206	0.80	-0.5
2,519,142	+		Pf1N1B4_2206	0.83	-0.7
2,519,142	+		Pf1N1B4_2206	0.83	-0.8
2,519,142	+		Pf1N1B4_2206	0.83	-1.3
2,519,143	-		Pf1N1B4_2206	0.83	-1.0
2,519,143	-		Pf1N1B4_2206	0.83	-1.3
2,519,143	-		Pf1N1B4_2206	0.83	-0.3
2,519,285	-				-0.7
2,519,341	+				-1.3
2,519,342	-				-0.3
2,519,342	-				+0.6
2,519,394	+				-2.0
2,519,395	-				+0.8
2,519,405	+				+0.3
2,519,405	+				-0.8
2,519,405	+				+0.7
2,519,405	+				+0.4
2,519,405	+				-0.4
2,519,405	+				+0.1
2,519,405	+				-0.3
2,519,405	+				-0.9
2,519,405	+				+0.3
2,519,405	+				+2.3
2,519,405	+				+0.7
2,519,405	+				-0.4
2,519,405	+				-0.7
2,519,406	-				-1.8
2,519,406	-				-1.0
2,519,406	-				-1.0
2,519,406	-				+0.3
2,519,406	-				-1.3
2,519,406	-				+2.3
2,519,407	+				+1.3
2,519,407	+				-1.3
2,519,407	+				-2.3
2,519,407	+				-0.9
2,519,407	+				-1.0
2,519,407	+				-3.6
2,519,407	+				-0.8
2,519,407	+				+1.9
2,519,407	+				-0.3
2,519,407	+				+0.7
2,519,407	+				+0.1
2,519,407	+				+1.9
2,519,407	+				+0.1
2,519,407	+				-0.3
2,519,407	+				-1.7
2,519,408	-				-0.7
2,519,408	-				+0.3
2,519,408	-				-1.3
2,519,408	-				-0.8
2,519,544	+				-1.0
2,519,544	+				+0.7
2,519,544	+				+1.0
2,519,544	+				-2.0
2,519,545	-				-0.7
2,519,822	-		Pf1N1B4_2207	0.37	+0.3
2,519,848	+		Pf1N1B4_2207	0.39	+0.1
2,519,888	+		Pf1N1B4_2207	0.43	-0.3
2,519,888	+		Pf1N1B4_2207	0.43	+0.3
2,519,888	+		Pf1N1B4_2207	0.43	+0.1
2,519,888	+		Pf1N1B4_2207	0.43	-2.8
2,519,906	-		Pf1N1B4_2207	0.45	-0.0
2,519,924	-		Pf1N1B4_2207	0.47	-0.3
2,520,053	+		Pf1N1B4_2207	0.59	+0.7
2,520,054	-		Pf1N1B4_2207	0.60	+0.9
2,520,054	-		Pf1N1B4_2207	0.60	-0.7
2,520,065	+		Pf1N1B4_2207	0.61	+0.5
2,520,065	+		Pf1N1B4_2207	0.61	+0.5
2,520,065	+		Pf1N1B4_2207	0.61	-0.1
2,520,077	+		Pf1N1B4_2207	0.62	+0.9
2,520,077	+		Pf1N1B4_2207	0.62	-0.6
2,520,077	+		Pf1N1B4_2207	0.62	+0.3
2,520,078	-		Pf1N1B4_2207	0.62	-0.3
2,520,080	+		Pf1N1B4_2207	0.62	+0.7
2,520,143	+		Pf1N1B4_2207	0.68	+1.9
2,520,143	+		Pf1N1B4_2207	0.68	+0.6
2,520,143	+		Pf1N1B4_2207	0.68	+2.1
2,520,144	-		Pf1N1B4_2207	0.68	-0.6
2,520,242	+		Pf1N1B4_2207	0.78	-0.5
2,520,242	+		Pf1N1B4_2207	0.78	-1.6
2,520,277	+		Pf1N1B4_2207	0.82	+0.3
2,520,277	+		Pf1N1B4_2207	0.82	+0.9
2,520,277	+		Pf1N1B4_2207	0.82	+0.3
2,520,278	-		Pf1N1B4_2207	0.82	-0.3
2,520,296	+		Pf1N1B4_2207	0.83	-0.2
2,520,296	+		Pf1N1B4_2207	0.83	+0.9
2,520,296	+		Pf1N1B4_2207	0.83	+0.3
2,520,296	+		Pf1N1B4_2207	0.83	+1.1
2,520,296	+		Pf1N1B4_2207	0.83	+1.6
2,520,296	+		Pf1N1B4_2207	0.83	+0.5
2,520,296	+		Pf1N1B4_2207	0.83	+0.4
2,520,314	+		Pf1N1B4_2207	0.85	+0.0
2,520,314	+		Pf1N1B4_2207	0.85	+0.6
2,520,314	+		Pf1N1B4_2207	0.85	-0.1
2,520,314	+		Pf1N1B4_2207	0.85	+0.6
2,520,314	+		Pf1N1B4_2207	0.85	+0.8
2,520,388	+				-0.4
2,520,419	+				+0.7
2,520,419	+				+1.7
2,520,419	+				-0.1
2,520,419	+				-0.1
2,520,419	+				+1.4
2,520,419	+				+0.3
2,520,419	+				+0.0
2,520,419	+				+0.7
2,520,420	-				-0.7
2,520,420	-				-0.7
2,520,420	-				-0.7
2,520,461	+				+0.6
2,520,461	+				-0.5
2,520,650	+				+0.7
2,520,650	+				-1.0
2,520,651	-				-1.5
2,520,651	-				-1.1
2,520,651	-				-1.3
2,520,651	-				-1.7
2,521,232	+		Pf1N1B4_2208	0.34	-1.7
2,521,232	+		Pf1N1B4_2208	0.34	-0.5
2,521,232	+		Pf1N1B4_2208	0.34	-1.4
2,521,232	+		Pf1N1B4_2208	0.34	-0.7
2,521,232	+		Pf1N1B4_2208	0.34	-0.7
2,521,233	-		Pf1N1B4_2208	0.34	-1.7
2,521,233	-		Pf1N1B4_2208	0.34	-2.3
2,521,460	+		Pf1N1B4_2208	0.44	-0.3