Experiment: Control soil assay; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06645 and HSERO_RS06650 are separated by 23 nucleotides HSERO_RS06650 and HSERO_RS06655 overlap by 2 nucleotides HSERO_RS06655 and HSERO_RS06660 overlap by 11 nucleotides HSERO_RS06660 and HSERO_RS06665 are separated by 552 nucleotides
HSERO_RS06645: HSERO_RS06645 - aldehyde dehydrogenase, at 1,510,454 to 1,512,733
_RS06645
HSERO_RS06650: HSERO_RS06650 - MarR family transcriptional regulator, at 1,512,757 to 1,513,197
_RS06650
HSERO_RS06655: HSERO_RS06655 - hypothetical protein, at 1,513,196 to 1,513,426
_RS06655
HSERO_RS06660: HSERO_RS06660 - flavin reductase, at 1,513,416 to 1,514,030
_RS06660
HSERO_RS06665: HSERO_RS06665 - diguanylate cyclase, at 1,514,583 to 1,516,118
_RS06665
Position (kb) 1513
1514
1515 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1512.626 kb on + strand at 1512.928 kb on - strand, within HSERO_RS06650 at 1512.962 kb on - strand, within HSERO_RS06650 at 1513.066 kb on - strand, within HSERO_RS06650 at 1513.066 kb on - strand, within HSERO_RS06650 at 1513.112 kb on + strand, within HSERO_RS06650 at 1513.190 kb on - strand at 1513.250 kb on + strand, within HSERO_RS06655 at 1513.308 kb on - strand, within HSERO_RS06655 at 1513.436 kb on + strand at 1513.436 kb on + strand at 1513.444 kb on - strand at 1513.624 kb on - strand, within HSERO_RS06660 at 1513.694 kb on + strand, within HSERO_RS06660 at 1514.071 kb on + strand at 1514.751 kb on + strand, within HSERO_RS06665 at 1514.774 kb on - strand, within HSERO_RS06665 at 1514.781 kb on + strand, within HSERO_RS06665 at 1514.807 kb on + strand, within HSERO_RS06665 at 1514.871 kb on - strand, within HSERO_RS06665 at 1514.873 kb on - strand, within HSERO_RS06665 at 1514.976 kb on - strand, within HSERO_RS06665
Per-strain Table
Position Strand Gene LocusTag Fraction Control soil assay; outgrowth in LB remove 1,512,626 + -0.1 1,512,928 - HSERO_RS06650 0.39 -3.6 1,512,962 - HSERO_RS06650 0.46 -4.5 1,513,066 - HSERO_RS06650 0.70 +0.1 1,513,066 - HSERO_RS06650 0.70 -1.3 1,513,112 + HSERO_RS06650 0.80 -2.6 1,513,190 - -0.1 1,513,250 + HSERO_RS06655 0.23 -0.8 1,513,308 - HSERO_RS06655 0.48 +0.3 1,513,436 + +1.5 1,513,436 + +0.2 1,513,444 - +0.6 1,513,624 - HSERO_RS06660 0.34 -1.7 1,513,694 + HSERO_RS06660 0.45 -1.3 1,514,071 + +0.2 1,514,751 + HSERO_RS06665 0.11 +0.6 1,514,774 - HSERO_RS06665 0.12 -2.3 1,514,781 + HSERO_RS06665 0.13 -0.5 1,514,807 + HSERO_RS06665 0.15 +0.6 1,514,871 - HSERO_RS06665 0.19 +0.5 1,514,873 - HSERO_RS06665 0.19 -0.2 1,514,976 - HSERO_RS06665 0.26 +1.0
Or see this region's nucleotide sequence