Experiment: Control soil assay; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04790 and HSERO_RS04795 are separated by 1 nucleotides HSERO_RS04795 and HSERO_RS04800 are separated by 6 nucleotides HSERO_RS04800 and HSERO_RS04805 are separated by 255 nucleotides
HSERO_RS04790: HSERO_RS04790 - acyl-CoA dehydrogenase, at 1,048,249 to 1,049,508
_RS04790
HSERO_RS04795: HSERO_RS04795 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,049,510 to 1,050,271
_RS04795
HSERO_RS04800: HSERO_RS04800 - LysR family transcriptional regulator, at 1,050,278 to 1,051,192
_RS04800
HSERO_RS04805: HSERO_RS04805 - 3-hydroxyisobutyrate dehydrogenase, at 1,051,448 to 1,052,314
_RS04805
Position (kb) 1050
1051
1052 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1049.376 kb on - strand, within HSERO_RS04790 at 1049.386 kb on - strand at 1049.412 kb on + strand at 1049.594 kb on - strand, within HSERO_RS04795 at 1049.653 kb on + strand, within HSERO_RS04795 at 1049.672 kb on - strand, within HSERO_RS04795 at 1049.696 kb on - strand, within HSERO_RS04795 at 1049.787 kb on - strand, within HSERO_RS04795 at 1049.887 kb on - strand, within HSERO_RS04795 at 1049.892 kb on + strand, within HSERO_RS04795 at 1050.031 kb on - strand, within HSERO_RS04795 at 1050.102 kb on - strand, within HSERO_RS04795 at 1050.124 kb on - strand, within HSERO_RS04795 at 1050.161 kb on + strand, within HSERO_RS04795 at 1050.161 kb on - strand, within HSERO_RS04795 at 1050.196 kb on + strand at 1050.266 kb on + strand at 1050.289 kb on - strand at 1050.291 kb on + strand at 1050.334 kb on - strand at 1050.393 kb on + strand, within HSERO_RS04800 at 1050.590 kb on - strand, within HSERO_RS04800 at 1050.717 kb on + strand, within HSERO_RS04800 at 1050.735 kb on - strand, within HSERO_RS04800 at 1050.803 kb on - strand, within HSERO_RS04800 at 1050.983 kb on + strand, within HSERO_RS04800 at 1051.020 kb on - strand, within HSERO_RS04800 at 1051.031 kb on - strand at 1051.130 kb on - strand at 1051.171 kb on + strand at 1051.254 kb on + strand at 1051.283 kb on + strand at 1051.440 kb on + strand at 1051.448 kb on - strand at 1051.477 kb on - strand at 1051.482 kb on - strand at 1051.562 kb on + strand, within HSERO_RS04805 at 1051.577 kb on + strand, within HSERO_RS04805 at 1051.585 kb on - strand, within HSERO_RS04805 at 1051.585 kb on - strand, within HSERO_RS04805 at 1051.595 kb on - strand, within HSERO_RS04805 at 1051.709 kb on + strand at 1051.714 kb on + strand, within HSERO_RS04805 at 1051.747 kb on - strand, within HSERO_RS04805 at 1051.840 kb on + strand, within HSERO_RS04805 at 1052.053 kb on - strand, within HSERO_RS04805 at 1052.129 kb on + strand, within HSERO_RS04805
Per-strain Table
Position Strand Gene LocusTag Fraction Control soil assay; outgrowth in LB remove 1,049,376 - HSERO_RS04790 0.89 +0.6 1,049,386 - +0.6 1,049,412 + -0.0 1,049,594 - HSERO_RS04795 0.11 -0.4 1,049,653 + HSERO_RS04795 0.19 +0.2 1,049,672 - HSERO_RS04795 0.21 +0.4 1,049,696 - HSERO_RS04795 0.24 -3.0 1,049,787 - HSERO_RS04795 0.36 -0.0 1,049,887 - HSERO_RS04795 0.49 -0.5 1,049,892 + HSERO_RS04795 0.50 -0.0 1,050,031 - HSERO_RS04795 0.68 -3.8 1,050,102 - HSERO_RS04795 0.78 -0.6 1,050,124 - HSERO_RS04795 0.81 -1.2 1,050,161 + HSERO_RS04795 0.85 -1.2 1,050,161 - HSERO_RS04795 0.85 -1.0 1,050,196 + +0.0 1,050,266 + -0.4 1,050,289 - +0.2 1,050,291 + +0.9 1,050,334 - +1.6 1,050,393 + HSERO_RS04800 0.13 -0.9 1,050,590 - HSERO_RS04800 0.34 -0.5 1,050,717 + HSERO_RS04800 0.48 -1.8 1,050,735 - HSERO_RS04800 0.50 -0.4 1,050,803 - HSERO_RS04800 0.57 -0.6 1,050,983 + HSERO_RS04800 0.77 -0.2 1,051,020 - HSERO_RS04800 0.81 -0.3 1,051,031 - -0.4 1,051,130 - -1.6 1,051,171 + -0.9 1,051,254 + -1.7 1,051,283 + +0.7 1,051,440 + -1.1 1,051,448 - +0.1 1,051,477 - +0.3 1,051,482 - -0.3 1,051,562 + HSERO_RS04805 0.13 -0.0 1,051,577 + HSERO_RS04805 0.15 -0.8 1,051,585 - HSERO_RS04805 0.16 -0.1 1,051,585 - HSERO_RS04805 0.16 +0.6 1,051,595 - HSERO_RS04805 0.17 -0.8 1,051,709 + -1.4 1,051,714 + HSERO_RS04805 0.31 -0.4 1,051,747 - HSERO_RS04805 0.34 +0.2 1,051,840 + HSERO_RS04805 0.45 +0.7 1,052,053 - HSERO_RS04805 0.70 -3.2 1,052,129 + HSERO_RS04805 0.79 +0.1
Or see this region's nucleotide sequence