Experiment: Control soil assay; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03920 and HSERO_RS03925 overlap by 4 nucleotides HSERO_RS03925 and HSERO_RS03930 overlap by 23 nucleotides HSERO_RS03930 and HSERO_RS03935 are separated by 46 nucleotides HSERO_RS03935 and HSERO_RS03940 are separated by 343 nucleotides
HSERO_RS03920: HSERO_RS03920 - hypothetical protein, at 863,839 to 864,165
_RS03920
HSERO_RS03925: HSERO_RS03925 - hypothetical protein, at 864,162 to 864,617
_RS03925
HSERO_RS03930: HSERO_RS03930 - hypothetical protein, at 864,595 to 864,894
_RS03930
HSERO_RS03935: HSERO_RS03935 - type III secretion protein, at 864,941 to 867,028
_RS03935
HSERO_RS03940: HSERO_RS03940 - hypothetical protein, at 867,372 to 868,112
_RS03940
Position (kb) 864
865
866
867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 864.017 kb on + strand, within HSERO_RS03920 at 864.025 kb on - strand, within HSERO_RS03920 at 864.146 kb on + strand at 864.154 kb on - strand at 864.246 kb on - strand, within HSERO_RS03925 at 864.369 kb on + strand, within HSERO_RS03925 at 864.451 kb on + strand, within HSERO_RS03925 at 864.627 kb on + strand, within HSERO_RS03930 at 864.654 kb on + strand, within HSERO_RS03930 at 864.666 kb on + strand, within HSERO_RS03930 at 864.671 kb on + strand, within HSERO_RS03930 at 864.674 kb on - strand, within HSERO_RS03930 at 864.842 kb on + strand, within HSERO_RS03930 at 864.868 kb on + strand at 864.896 kb on - strand at 864.902 kb on + strand at 865.049 kb on + strand at 865.062 kb on - strand at 865.112 kb on - strand at 865.483 kb on + strand, within HSERO_RS03935 at 865.656 kb on - strand, within HSERO_RS03935 at 865.767 kb on - strand, within HSERO_RS03935 at 865.768 kb on - strand, within HSERO_RS03935 at 865.841 kb on - strand, within HSERO_RS03935 at 865.927 kb on + strand, within HSERO_RS03935 at 865.962 kb on + strand, within HSERO_RS03935 at 866.346 kb on - strand, within HSERO_RS03935 at 866.497 kb on + strand, within HSERO_RS03935 at 866.512 kb on + strand, within HSERO_RS03935 at 866.520 kb on - strand, within HSERO_RS03935 at 866.532 kb on - strand, within HSERO_RS03935 at 866.609 kb on + strand, within HSERO_RS03935 at 866.690 kb on + strand, within HSERO_RS03935 at 866.775 kb on - strand, within HSERO_RS03935 at 866.957 kb on + strand at 866.992 kb on + strand at 867.264 kb on - strand at 867.264 kb on - strand at 867.322 kb on - strand at 867.412 kb on - strand at 867.551 kb on + strand, within HSERO_RS03940 at 867.668 kb on + strand, within HSERO_RS03940 at 867.894 kb on + strand, within HSERO_RS03940 at 867.914 kb on - strand, within HSERO_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction Control soil assay; outgrowth in LB remove 864,017 + HSERO_RS03920 0.54 -0.2 864,025 - HSERO_RS03920 0.57 +0.7 864,146 + -1.7 864,154 - -2.4 864,246 - HSERO_RS03925 0.18 +1.2 864,369 + HSERO_RS03925 0.45 +0.7 864,451 + HSERO_RS03925 0.63 +0.1 864,627 + HSERO_RS03930 0.11 -1.6 864,654 + HSERO_RS03930 0.20 -2.3 864,666 + HSERO_RS03930 0.24 -0.7 864,671 + HSERO_RS03930 0.25 -0.3 864,674 - HSERO_RS03930 0.26 -0.7 864,842 + HSERO_RS03930 0.82 +0.4 864,868 + -0.6 864,896 - +0.1 864,902 + -0.6 865,049 + +0.9 865,062 - -0.7 865,112 - -1.8 865,483 + HSERO_RS03935 0.26 -2.2 865,656 - HSERO_RS03935 0.34 -2.8 865,767 - HSERO_RS03935 0.40 +0.6 865,768 - HSERO_RS03935 0.40 -0.5 865,841 - HSERO_RS03935 0.43 -0.4 865,927 + HSERO_RS03935 0.47 -0.7 865,962 + HSERO_RS03935 0.49 -1.6 866,346 - HSERO_RS03935 0.67 -0.2 866,497 + HSERO_RS03935 0.75 -0.0 866,512 + HSERO_RS03935 0.75 -1.0 866,520 - HSERO_RS03935 0.76 -0.7 866,532 - HSERO_RS03935 0.76 +0.0 866,609 + HSERO_RS03935 0.80 -1.3 866,690 + HSERO_RS03935 0.84 +0.6 866,775 - HSERO_RS03935 0.88 +1.4 866,957 + -0.9 866,992 + -0.3 867,264 - +0.8 867,264 - +0.1 867,322 - -0.1 867,412 - -0.5 867,551 + HSERO_RS03940 0.24 +0.1 867,668 + HSERO_RS03940 0.40 -0.4 867,894 + HSERO_RS03940 0.70 +0.9 867,914 - HSERO_RS03940 0.73 -0.2
Or see this region's nucleotide sequence