Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2242

Experiment: Chloride 62.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloride 62.5 mM
2,306,383	+	ycf52	Synpcc7942_2240	0.79	+3.3
2,306,395	+	ycf52	Synpcc7942_2240	0.82	+2.2
2,306,400	+	ycf52	Synpcc7942_2240	0.83	-1.1
2,306,400	+	ycf52	Synpcc7942_2240	0.83	+4.7
2,306,428	-	ycf52	Synpcc7942_2240	0.88	-0.1
2,306,439	+				-1.1
2,306,447	-				+1.0
2,306,485	+				+2.0
2,306,493	-				+2.1
2,306,510	+				-0.6
2,306,536	+				-1.1
2,306,536	+				+3.4
2,306,536	+				-0.6
2,306,536	+				-0.1
2,306,536	+				-1.1
2,306,536	+				-0.1
2,306,536	+				+1.9
2,306,544	-				-0.1
2,306,544	-				+4.9
2,306,544	-				+3.1
2,306,544	-				+3.4
2,306,544	-				+4.1
2,306,551	-				+2.4
2,306,578	-				+2.5
2,306,595	+				+2.8
2,306,595	+				-1.1
2,306,657	-		Synpcc7942_2241	0.13	-0.1
2,306,657	-		Synpcc7942_2241	0.13	-1.1
2,306,657	-		Synpcc7942_2241	0.13	+2.8
2,306,694	+		Synpcc7942_2241	0.17	-1.1
2,306,702	-		Synpcc7942_2241	0.18	-1.1
2,306,713	-		Synpcc7942_2241	0.19	-1.1
2,306,717	+		Synpcc7942_2241	0.20	+2.2
2,306,743	-		Synpcc7942_2241	0.23	+3.7
2,306,773	-		Synpcc7942_2241	0.26	+5.8
2,306,777	+		Synpcc7942_2241	0.26	+3.8
2,306,777	+		Synpcc7942_2241	0.26	-0.1
2,306,806	-		Synpcc7942_2241	0.30	-2.1
2,306,809	-		Synpcc7942_2241	0.30	+1.0
2,306,819	-		Synpcc7942_2241	0.31	-2.7
2,306,822	+		Synpcc7942_2241	0.32	-1.1
2,306,828	-		Synpcc7942_2241	0.32	+3.4
2,306,828	-		Synpcc7942_2241	0.32	-0.1
2,306,884	-		Synpcc7942_2241	0.39	+5.2
2,306,887	-		Synpcc7942_2241	0.39	-0.7
2,306,920	+		Synpcc7942_2241	0.43	-1.4
2,306,928	-		Synpcc7942_2241	0.44	-0.1
2,306,928	-		Synpcc7942_2241	0.44	-1.1
2,306,991	+		Synpcc7942_2241	0.51	-0.6
2,307,005	+		Synpcc7942_2241	0.53	+2.9
2,307,014	+		Synpcc7942_2241	0.54	+3.4
2,307,014	+				-1.1
2,307,022	-		Synpcc7942_2241	0.55	-0.1
2,307,022	-		Synpcc7942_2241	0.55	+2.8
2,307,022	-		Synpcc7942_2241	0.55	-1.1
2,307,022	-		Synpcc7942_2241	0.55	+2.2
2,307,023	+		Synpcc7942_2241	0.55	-1.7
2,307,043	+		Synpcc7942_2241	0.57	+0.7
2,307,051	-		Synpcc7942_2241	0.58	+1.3
2,307,092	-		Synpcc7942_2241	0.63	+2.2
2,307,093	+		Synpcc7942_2241	0.63	-2.1
2,307,103	+		Synpcc7942_2241	0.64	+0.4
2,307,103	+		Synpcc7942_2241	0.64	+2.9
2,307,103	+		Synpcc7942_2241	0.64	+5.6
2,307,111	-		Synpcc7942_2241	0.65	+3.1
2,307,111	-		Synpcc7942_2241	0.65	+3.5
2,307,111	-		Synpcc7942_2241	0.65	-2.4
2,307,111	-		Synpcc7942_2241	0.65	+0.6
2,307,116	+		Synpcc7942_2241	0.65	-1.1
2,307,116	-		Synpcc7942_2241	0.65	+1.2
2,307,127	-		Synpcc7942_2241	0.67	-1.1
2,307,142	-		Synpcc7942_2241	0.68	-0.1
2,307,202	-		Synpcc7942_2241	0.75	-1.1
2,307,212	+		Synpcc7942_2241	0.76	+1.8
2,307,248	+		Synpcc7942_2241	0.80	+2.2
2,307,248	+		Synpcc7942_2241	0.80	-1.7
2,307,261	+				+2.6
2,307,283	+				+0.3
2,307,306	-				+0.9
2,307,306	-				-1.1
2,307,308	+				-2.4
2,307,319	+				+1.9
2,307,349	-				-2.1
2,307,351	-				-0.9
2,307,358	+				-1.1
2,307,361	-				-1.1
2,307,433	+				-0.1
2,307,441	-				-1.1
2,307,443	+		Synpcc7942_2242	0.19	-3.1
2,307,459	+		Synpcc7942_2242	0.21	+0.5
2,307,459	+		Synpcc7942_2242	0.21	-0.1
2,307,459	+		Synpcc7942_2242	0.21	-1.1
2,307,467	-		Synpcc7942_2242	0.21	-3.1
2,307,469	+		Synpcc7942_2242	0.22	+0.5
2,307,474	+		Synpcc7942_2242	0.22	-0.6
2,307,511	-		Synpcc7942_2242	0.26	-0.1
2,307,511	-		Synpcc7942_2242	0.26	-2.1
2,307,519	-		Synpcc7942_2242	0.27	-0.1
2,307,523	+		Synpcc7942_2242	0.27	-1.7
2,307,523	+		Synpcc7942_2242	0.27	-0.1
2,307,531	-		Synpcc7942_2242	0.28	-1.1
2,307,536	-		Synpcc7942_2242	0.28	-3.3
2,307,538	+		Synpcc7942_2242	0.29	-0.1
2,307,538	+		Synpcc7942_2242	0.29	+3.2
2,307,542	+				-1.7
2,307,543	+		Synpcc7942_2242	0.29	-1.7
2,307,551	-		Synpcc7942_2242	0.30	+3.6
2,307,551	-		Synpcc7942_2242	0.30	+0.7
2,307,562	+				-1.1
2,307,574	-		Synpcc7942_2242	0.32	-0.1
2,307,589	+		Synpcc7942_2242	0.34	-0.1
2,307,600	-		Synpcc7942_2242	0.35	-1.7
2,307,602	-				+1.5
2,307,616	+		Synpcc7942_2242	0.36	+0.2
2,307,631	-				+0.9
2,307,653	+		Synpcc7942_2242	0.40	-1.1
2,307,661	-		Synpcc7942_2242	0.41	-0.1
2,307,663	-		Synpcc7942_2242	0.41	+4.1
2,307,665	+		Synpcc7942_2242	0.41	-0.1
2,307,673	-		Synpcc7942_2242	0.42	-1.5
2,307,673	-		Synpcc7942_2242	0.42	-2.1
2,307,673	-		Synpcc7942_2242	0.42	-0.1
2,307,720	+		Synpcc7942_2242	0.47	-1.7
2,307,779	+		Synpcc7942_2242	0.53	-0.1
2,307,779	+		Synpcc7942_2242	0.53	-1.7
2,307,784	+		Synpcc7942_2242	0.53	-0.1
2,307,784	+		Synpcc7942_2242	0.53	-0.1
2,307,787	-				-1.1
2,307,787	-		Synpcc7942_2242	0.54	+1.3
2,307,787	-		Synpcc7942_2242	0.54	-0.1
2,307,820	+		Synpcc7942_2242	0.57	-1.7
2,307,843	-		Synpcc7942_2242	0.59	-1.1
2,307,843	-		Synpcc7942_2242	0.59	-0.1
2,307,843	-		Synpcc7942_2242	0.59	-1.7
2,307,857	-		Synpcc7942_2242	0.61	-0.1
2,307,958	+		Synpcc7942_2242	0.71	-2.4
2,307,966	-		Synpcc7942_2242	0.72	+3.4
2,307,976	-		Synpcc7942_2242	0.73	-1.1
2,307,976	-		Synpcc7942_2242	0.73	-1.1
2,307,985	-		Synpcc7942_2242	0.74	-3.7
2,308,023	+		Synpcc7942_2242	0.77	-0.1
2,308,031	-				-0.1
2,308,046	+		Synpcc7942_2242	0.80	-2.4
2,308,080	-		Synpcc7942_2242	0.83	-2.1
2,308,115	+		Synpcc7942_2242	0.87	-1.7
2,308,159	+				-2.1
2,308,168	+				-2.9
2,308,168	+				-2.9
2,308,267	-				+0.1
2,308,319	+				+1.2
2,308,319	+				+1.5
2,308,350	-				-0.1
2,308,350	-				+0.2
2,308,382	+	proA	Synpcc7942_2243	0.10	+2.8
2,308,400	+	proA	Synpcc7942_2243	0.12	+2.7
2,308,408	+	proA	Synpcc7942_2243	0.12	+1.2
2,308,418	+	proA	Synpcc7942_2243	0.13	+2.2
2,308,443	-	proA	Synpcc7942_2243	0.15	+1.9
2,308,455	-	proA	Synpcc7942_2243	0.16	+2.6
2,308,534	+	proA	Synpcc7942_2243	0.23	+1.3
2,308,541	-	proA	Synpcc7942_2243	0.23	-2.1
2,308,629	+	proA	Synpcc7942_2243	0.30	+0.2
2,308,657	+	proA	Synpcc7942_2243	0.32	+1.9
2,308,664	-	proA	Synpcc7942_2243	0.33	+2.7
2,308,679	-	proA	Synpcc7942_2243	0.34	+2.1
2,308,687	+	proA	Synpcc7942_2243	0.35	+2.1
2,308,711	-	proA	Synpcc7942_2243	0.37	+2.6
2,308,739	-	proA	Synpcc7942_2243	0.39	+3.6
2,308,776	+	proA	Synpcc7942_2243	0.42	+2.4
2,308,776	+	proA	Synpcc7942_2243	0.42	+3.3
2,308,786	-	proA	Synpcc7942_2243	0.43	+1.8
2,308,797	+	proA	Synpcc7942_2243	0.44	+3.0
2,308,797	+	proA	Synpcc7942_2243	0.44	+1.0
2,308,814	-	proA	Synpcc7942_2243	0.45	+2.2
2,308,829	-	proA	Synpcc7942_2243	0.46	+1.8
2,308,834	+	proA	Synpcc7942_2243	0.47	-1.5
2,308,845	+	proA	Synpcc7942_2243	0.48	+4.8
2,308,853	-	proA	Synpcc7942_2243	0.48	-0.1
2,308,920	-	proA	Synpcc7942_2243	0.54	+0.8
2,308,937	+	proA	Synpcc7942_2243	0.55	+2.9
2,308,955	-	proA	Synpcc7942_2243	0.56	-0.1
2,308,956	-	proA	Synpcc7942_2243	0.56	+3.3
2,308,967	+	proA	Synpcc7942_2243	0.57	+1.5
2,309,005	+	proA	Synpcc7942_2243	0.60	-1.7
2,309,047	+	proA	Synpcc7942_2243	0.64	-1.1
2,309,066	-	proA	Synpcc7942_2243	0.65	+2.8
2,309,125	-	proA	Synpcc7942_2243	0.70	-1.7
2,309,143	-	proA	Synpcc7942_2243	0.71	+2.7
2,309,157	+	proA	Synpcc7942_2243	0.73	+0.9
2,309,157	+	proA	Synpcc7942_2243	0.73	+1.8
2,309,157	-	proA	Synpcc7942_2243	0.73	+2.9
2,309,163	+	proA	Synpcc7942_2243	0.73	+2.1
2,309,165	-	proA	Synpcc7942_2243	0.73	+2.1
2,309,177	-	proA	Synpcc7942_2243	0.74	-0.1
2,309,236	+	proA	Synpcc7942_2243	0.79	+1.1