Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0944

Experiment: Chloride 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargD and folC overlap by 4 nucleotidesfolC and Synpcc7942_0945 are separated by 52 nucleotides Synpcc7942_0943: argD - acetylornithine aminotransferase, at 950,237 to 951,505 argD Synpcc7942_0944: folC - FolC bifunctional protein, at 951,502 to 952,740 folC Synpcc7942_0945: Synpcc7942_0945 - hypothetical protein, at 952,793 to 953,767 _0945 Position (kb) 951 952 953Strain fitness (log2 ratio) -1 0 1 2 3at 951.518 kb on - strandat 952.790 kb on + strandat 952.841 kb on - strandat 952.855 kb on - strandat 953.031 kb on + strand, within Synpcc7942_0945at 953.096 kb on + strand, within Synpcc7942_0945at 953.191 kb on + strand, within Synpcc7942_0945at 953.425 kb on + strand, within Synpcc7942_0945at 953.443 kb on - strand, within Synpcc7942_0945at 953.514 kb on + strand, within Synpcc7942_0945at 953.613 kb on - strand, within Synpcc7942_0945at 953.613 kb on - strand, within Synpcc7942_0945at 953.648 kb on - strand, within Synpcc7942_0945at 953.650 kb on - strand, within Synpcc7942_0945at 953.652 kb on + strand, within Synpcc7942_0945at 953.675 kb on + strandat 953.675 kb on + strandat 953.679 kb on + strandat 953.710 kb on + strandat 953.712 kb on + strandat 953.712 kb on + strandat 953.712 kb on + strandat 953.712 kb on + strandat 953.720 kb on - strandat 953.720 kb on - strandat 953.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 62.5 mM
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951,518 - +1.1
952,790 + +2.9
952,841 - +1.9
952,855 - +2.5
953,031 + Synpcc7942_0945 0.24 -0.1
953,096 + Synpcc7942_0945 0.31 -0.1
953,191 + Synpcc7942_0945 0.41 +1.9
953,425 + Synpcc7942_0945 0.65 -1.7
953,443 - Synpcc7942_0945 0.67 -1.1
953,514 + Synpcc7942_0945 0.74 +1.5
953,613 - Synpcc7942_0945 0.84 +0.1
953,613 - Synpcc7942_0945 0.84 +3.0
953,648 - Synpcc7942_0945 0.88 +3.1
953,650 - Synpcc7942_0945 0.88 +3.7
953,652 + Synpcc7942_0945 0.88 -0.1
953,675 + +3.3
953,675 + +1.9
953,679 + -0.5
953,710 + -1.7
953,712 + -0.1
953,712 + -1.1
953,712 + +1.7
953,712 + -0.1
953,720 - +2.1
953,720 - +2.2
953,720 - +0.9

Or see this region's nucleotide sequence