Experiment: Chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0874 and Synpcc7942_0875 are separated by 3 nucleotides Synpcc7942_0875 and alaS are separated by 88 nucleotides
Synpcc7942_0874: Synpcc7942_0874 - DEAD/DEAH box helicase-like, at 874,390 to 877,449
_0874
Synpcc7942_0875: Synpcc7942_0875 - hypothetical protein, at 877,453 to 877,887
_0875
Synpcc7942_0876: alaS - alanyl-tRNA synthetase, at 877,976 to 880,675
alaS
Position (kb) 877
878 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 876.494 kb on - strand, within Synpcc7942_0874 at 876.501 kb on + strand, within Synpcc7942_0874 at 876.514 kb on - strand, within Synpcc7942_0874 at 876.521 kb on - strand, within Synpcc7942_0874 at 876.521 kb on - strand, within Synpcc7942_0874 at 876.524 kb on + strand, within Synpcc7942_0874 at 876.524 kb on + strand, within Synpcc7942_0874 at 876.524 kb on + strand, within Synpcc7942_0874 at 876.572 kb on + strand, within Synpcc7942_0874 at 876.572 kb on + strand, within Synpcc7942_0874 at 876.572 kb on + strand, within Synpcc7942_0874 at 876.580 kb on - strand, within Synpcc7942_0874 at 876.580 kb on - strand, within Synpcc7942_0874 at 876.607 kb on + strand, within Synpcc7942_0874 at 876.620 kb on + strand, within Synpcc7942_0874 at 876.621 kb on + strand, within Synpcc7942_0874 at 876.625 kb on + strand, within Synpcc7942_0874 at 876.625 kb on + strand, within Synpcc7942_0874 at 876.625 kb on + strand, within Synpcc7942_0874 at 876.625 kb on + strand, within Synpcc7942_0874 at 876.625 kb on + strand, within Synpcc7942_0874 at 876.625 kb on + strand, within Synpcc7942_0874 at 876.625 kb on + strand, within Synpcc7942_0874 at 876.625 kb on + strand, within Synpcc7942_0874 at 876.640 kb on + strand, within Synpcc7942_0874 at 876.640 kb on + strand, within Synpcc7942_0874 at 876.640 kb on + strand, within Synpcc7942_0874 at 876.643 kb on - strand, within Synpcc7942_0874 at 876.648 kb on - strand, within Synpcc7942_0874 at 876.648 kb on - strand, within Synpcc7942_0874 at 876.650 kb on + strand, within Synpcc7942_0874 at 876.658 kb on - strand, within Synpcc7942_0874 at 876.659 kb on - strand, within Synpcc7942_0874 at 876.672 kb on - strand, within Synpcc7942_0874 at 876.688 kb on + strand, within Synpcc7942_0874 at 876.699 kb on + strand, within Synpcc7942_0874 at 876.699 kb on + strand, within Synpcc7942_0874 at 876.699 kb on + strand, within Synpcc7942_0874 at 876.699 kb on + strand, within Synpcc7942_0874 at 876.706 kb on + strand, within Synpcc7942_0874 at 876.706 kb on - strand, within Synpcc7942_0874 at 876.707 kb on - strand, within Synpcc7942_0874 at 876.707 kb on - strand, within Synpcc7942_0874 at 876.707 kb on - strand, within Synpcc7942_0874 at 876.746 kb on - strand, within Synpcc7942_0874 at 876.761 kb on - strand, within Synpcc7942_0874 at 876.808 kb on - strand, within Synpcc7942_0874 at 876.812 kb on + strand, within Synpcc7942_0874 at 876.819 kb on - strand, within Synpcc7942_0874 at 876.822 kb on - strand, within Synpcc7942_0874 at 876.826 kb on + strand, within Synpcc7942_0874 at 876.826 kb on + strand, within Synpcc7942_0874 at 876.852 kb on + strand, within Synpcc7942_0874 at 876.865 kb on - strand, within Synpcc7942_0874 at 876.887 kb on + strand, within Synpcc7942_0874 at 876.897 kb on + strand, within Synpcc7942_0874 at 876.905 kb on - strand, within Synpcc7942_0874 at 876.920 kb on - strand, within Synpcc7942_0874 at 876.958 kb on - strand, within Synpcc7942_0874 at 877.000 kb on - strand, within Synpcc7942_0874 at 877.015 kb on - strand, within Synpcc7942_0874 at 877.071 kb on + strand, within Synpcc7942_0874 at 877.076 kb on + strand, within Synpcc7942_0874 at 877.079 kb on - strand, within Synpcc7942_0874 at 877.079 kb on - strand, within Synpcc7942_0874 at 877.081 kb on + strand, within Synpcc7942_0874 at 877.088 kb on + strand, within Synpcc7942_0874 at 877.096 kb on - strand, within Synpcc7942_0874 at 877.156 kb on + strand at 877.166 kb on - strand at 877.175 kb on + strand at 877.175 kb on + strand at 877.175 kb on + strand at 877.175 kb on + strand at 877.175 kb on + strand at 877.183 kb on - strand at 877.183 kb on - strand at 877.183 kb on - strand at 877.183 kb on - strand at 877.183 kb on - strand at 877.209 kb on - strand at 877.216 kb on - strand at 877.219 kb on + strand at 877.250 kb on - strand at 877.290 kb on - strand at 877.340 kb on + strand at 877.421 kb on - strand at 877.433 kb on + strand at 877.435 kb on + strand at 877.440 kb on + strand at 877.443 kb on - strand at 877.445 kb on + strand at 877.445 kb on + strand at 877.445 kb on + strand at 877.453 kb on - strand at 877.453 kb on - strand at 877.453 kb on - strand at 877.469 kb on + strand at 877.475 kb on + strand at 877.487 kb on - strand at 877.565 kb on - strand, within Synpcc7942_0875 at 877.567 kb on - strand, within Synpcc7942_0875 at 877.572 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.605 kb on + strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.613 kb on - strand, within Synpcc7942_0875 at 877.618 kb on + strand, within Synpcc7942_0875 at 877.631 kb on - strand, within Synpcc7942_0875 at 877.632 kb on - strand, within Synpcc7942_0875 at 877.636 kb on + strand, within Synpcc7942_0875 at 877.644 kb on - strand, within Synpcc7942_0875 at 877.679 kb on + strand, within Synpcc7942_0875 at 877.679 kb on + strand, within Synpcc7942_0875 at 877.687 kb on - strand, within Synpcc7942_0875 at 877.687 kb on - strand, within Synpcc7942_0875 at 877.714 kb on + strand, within Synpcc7942_0875 at 877.737 kb on - strand, within Synpcc7942_0875 at 877.737 kb on - strand, within Synpcc7942_0875 at 877.761 kb on + strand, within Synpcc7942_0875 at 877.761 kb on + strand, within Synpcc7942_0875 at 877.761 kb on + strand, within Synpcc7942_0875 at 877.769 kb on - strand, within Synpcc7942_0875 at 877.788 kb on - strand, within Synpcc7942_0875 at 877.788 kb on - strand, within Synpcc7942_0875 at 877.828 kb on - strand, within Synpcc7942_0875 at 877.841 kb on - strand, within Synpcc7942_0875 at 877.858 kb on - strand at 877.899 kb on - strand at 877.907 kb on - strand at 877.927 kb on + strand at 877.931 kb on - strand at 877.980 kb on + strand at 878.049 kb on - strand at 878.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 62.5 mM remove 876,494 - Synpcc7942_0874 0.69 +1.4 876,501 + Synpcc7942_0874 0.69 -0.5 876,514 - Synpcc7942_0874 0.69 +2.8 876,521 - Synpcc7942_0874 0.70 +1.5 876,521 - Synpcc7942_0874 0.70 -2.2 876,524 + Synpcc7942_0874 0.70 -0.2 876,524 + Synpcc7942_0874 0.70 +3.1 876,524 + Synpcc7942_0874 0.70 +1.2 876,572 + Synpcc7942_0874 0.71 -2.2 876,572 + Synpcc7942_0874 0.71 +2.0 876,572 + Synpcc7942_0874 0.71 +1.7 876,580 - Synpcc7942_0874 0.72 -2.2 876,580 - Synpcc7942_0874 0.72 +0.4 876,607 + Synpcc7942_0874 0.72 -1.2 876,620 + Synpcc7942_0874 0.73 +1.5 876,621 + Synpcc7942_0874 0.73 +1.8 876,625 + Synpcc7942_0874 0.73 +0.2 876,625 + Synpcc7942_0874 0.73 +0.6 876,625 + Synpcc7942_0874 0.73 +2.7 876,625 + Synpcc7942_0874 0.73 -2.5 876,625 + Synpcc7942_0874 0.73 +0.1 876,625 + Synpcc7942_0874 0.73 +3.0 876,625 + Synpcc7942_0874 0.73 +2.1 876,625 + Synpcc7942_0874 0.73 -0.2 876,640 + Synpcc7942_0874 0.74 +2.6 876,640 + Synpcc7942_0874 0.74 -2.5 876,640 + Synpcc7942_0874 0.74 +1.4 876,643 - Synpcc7942_0874 0.74 -0.5 876,648 - Synpcc7942_0874 0.74 -2.2 876,648 - Synpcc7942_0874 0.74 +0.8 876,650 + Synpcc7942_0874 0.74 +1.3 876,658 - Synpcc7942_0874 0.74 +0.4 876,659 - Synpcc7942_0874 0.74 +0.5 876,672 - Synpcc7942_0874 0.75 -2.2 876,688 + Synpcc7942_0874 0.75 -1.2 876,699 + Synpcc7942_0874 0.75 +1.3 876,699 + Synpcc7942_0874 0.75 +2.8 876,699 + Synpcc7942_0874 0.75 +0.8 876,699 + Synpcc7942_0874 0.75 +1.4 876,706 + Synpcc7942_0874 0.76 +2.9 876,706 - Synpcc7942_0874 0.76 +1.4 876,707 - Synpcc7942_0874 0.76 +3.0 876,707 - Synpcc7942_0874 0.76 -1.8 876,707 - Synpcc7942_0874 0.76 +1.4 876,746 - Synpcc7942_0874 0.77 +4.6 876,761 - Synpcc7942_0874 0.77 +2.2 876,808 - Synpcc7942_0874 0.79 +1.5 876,812 + Synpcc7942_0874 0.79 +1.8 876,819 - Synpcc7942_0874 0.79 -1.2 876,822 - Synpcc7942_0874 0.79 -0.2 876,826 + Synpcc7942_0874 0.80 -0.2 876,826 + Synpcc7942_0874 0.80 +0.4 876,852 + Synpcc7942_0874 0.80 -1.2 876,865 - Synpcc7942_0874 0.81 +0.4 876,887 + Synpcc7942_0874 0.82 -2.2 876,897 + Synpcc7942_0874 0.82 -0.2 876,905 - Synpcc7942_0874 0.82 +4.0 876,920 - Synpcc7942_0874 0.83 -0.2 876,958 - Synpcc7942_0874 0.84 +0.0 877,000 - Synpcc7942_0874 0.85 -1.2 877,015 - Synpcc7942_0874 0.86 +2.6 877,071 + Synpcc7942_0874 0.88 +2.1 877,076 + Synpcc7942_0874 0.88 -2.2 877,079 - Synpcc7942_0874 0.88 -0.6 877,079 - Synpcc7942_0874 0.88 +3.9 877,081 + Synpcc7942_0874 0.88 -2.2 877,088 + Synpcc7942_0874 0.88 +1.4 877,096 - Synpcc7942_0874 0.88 +1.9 877,156 + +0.3 877,166 - -2.2 877,175 + +0.6 877,175 + +2.7 877,175 + +1.5 877,175 + +0.6 877,175 + +0.4 877,183 - -0.6 877,183 - +3.3 877,183 - -1.2 877,183 - +0.5 877,183 - +1.6 877,209 - +1.1 877,216 - -2.2 877,219 + +0.5 877,250 - +0.8 877,290 - -0.2 877,340 + -0.2 877,421 - +0.5 877,433 + -0.7 877,435 + -0.2 877,440 + +1.9 877,443 - -0.2 877,445 + -1.2 877,445 + +3.4 877,445 + +0.1 877,453 - +2.2 877,453 - -1.2 877,453 - +0.6 877,469 + +3.0 877,475 + +1.1 877,487 - +2.3 877,565 - Synpcc7942_0875 0.26 +2.7 877,567 - Synpcc7942_0875 0.26 +1.7 877,572 + Synpcc7942_0875 0.27 -1.8 877,605 + Synpcc7942_0875 0.35 -1.2 877,605 + Synpcc7942_0875 0.35 -0.2 877,605 + Synpcc7942_0875 0.35 +1.1 877,605 + Synpcc7942_0875 0.35 +1.8 877,605 + Synpcc7942_0875 0.35 +3.1 877,605 + Synpcc7942_0875 0.35 -2.2 877,605 + Synpcc7942_0875 0.35 -0.2 877,605 + Synpcc7942_0875 0.35 +2.4 877,605 + Synpcc7942_0875 0.35 -1.0 877,613 - Synpcc7942_0875 0.37 -1.8 877,613 - Synpcc7942_0875 0.37 +1.7 877,613 - Synpcc7942_0875 0.37 +1.8 877,613 - Synpcc7942_0875 0.37 +2.0 877,613 - Synpcc7942_0875 0.37 -1.2 877,613 - Synpcc7942_0875 0.37 +3.6 877,613 - Synpcc7942_0875 0.37 -0.8 877,618 + Synpcc7942_0875 0.38 +1.9 877,631 - Synpcc7942_0875 0.41 -0.2 877,632 - Synpcc7942_0875 0.41 -0.2 877,636 + Synpcc7942_0875 0.42 -0.2 877,644 - Synpcc7942_0875 0.44 +1.4 877,679 + Synpcc7942_0875 0.52 +3.7 877,679 + Synpcc7942_0875 0.52 -0.8 877,687 - Synpcc7942_0875 0.54 +1.0 877,687 - Synpcc7942_0875 0.54 +0.8 877,714 + Synpcc7942_0875 0.60 +1.9 877,737 - Synpcc7942_0875 0.65 +2.4 877,737 - Synpcc7942_0875 0.65 +1.6 877,761 + Synpcc7942_0875 0.71 +1.2 877,761 + Synpcc7942_0875 0.71 -0.2 877,761 + Synpcc7942_0875 0.71 +3.2 877,769 - Synpcc7942_0875 0.73 -0.8 877,788 - Synpcc7942_0875 0.77 +2.3 877,788 - Synpcc7942_0875 0.77 -1.2 877,828 - Synpcc7942_0875 0.86 +0.1 877,841 - Synpcc7942_0875 0.89 -1.8 877,858 - +1.5 877,899 - +1.5 877,907 - +4.0 877,927 + +3.0 877,931 - +1.4 877,980 + -0.2 878,049 - -0.2 878,059 + +3.0
Or see this region's nucleotide sequence