Strain Fitness in Sinorhizobium meliloti 1021 around SMc04440
Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,182,894 | + | -0.2 | |||
2,182,940 | + | SMc04440 | 0.14 | -0.8 | |
2,182,966 | + | SMc04440 | 0.22 | -2.7 | |
2,183,068 | - | SMc04440 | 0.49 | +1.0 | |
2,183,068 | - | SMc04440 | 0.49 | -1.6 | |
2,183,085 | + | SMc04440 | 0.54 | -0.7 | |
2,183,093 | + | SMc04440 | 0.56 | -1.0 | |
2,183,125 | + | SMc04440 | 0.65 | -0.3 | |
2,183,242 | - | -0.7 | |||
2,183,242 | - | -0.2 | |||
2,183,247 | + | -0.3 | |||
2,183,252 | + | -0.0 | |||
2,183,252 | + | +0.5 | |||
2,183,252 | + | -0.8 | |||
2,183,253 | - | -0.4 | |||
2,183,253 | - | -1.2 | |||
2,183,253 | - | -0.4 | |||
2,183,253 | - | +1.1 | |||
2,183,256 | + | +0.0 | |||
2,183,256 | + | -3.1 | |||
2,183,257 | - | +0.2 | |||
2,183,278 | - | +0.1 | |||
2,183,278 | - | +0.7 | |||
2,183,477 | + | +0.6 | |||
2,183,486 | + | -0.3 | |||
2,183,486 | + | +0.2 | |||
2,183,488 | + | +0.2 | |||
2,183,580 | + | SMc04196 | 0.18 | +0.1 | |
2,183,580 | + | SMc04196 | 0.18 | -0.0 | |
2,183,590 | + | SMc04196 | 0.20 | -0.1 | |
2,183,739 | + | SMc04196 | 0.44 | +0.0 | |
2,183,740 | - | SMc04196 | 0.44 | -0.2 | |
2,183,740 | - | SMc04196 | 0.44 | +0.5 | |
2,183,740 | - | SMc04196 | 0.44 | +0.7 | |
2,183,794 | + | SMc04196 | 0.53 | +0.0 | |
2,183,818 | + | SMc04196 | 0.57 | +0.2 | |
2,183,818 | + | SMc04196 | 0.57 | +0.1 | |
2,183,992 | - | SMc04196 | 0.85 | -0.1 |
Or see this region's nucleotide sequence