Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04334 and SMc05020 are separated by 17 nucleotides SMc05020 and SMc04335 are separated by 144 nucleotides SMc04335 and SMc04336 are separated by 92 nucleotides SMc04336 and SMc04337 are separated by 306 nucleotides SMc04337 and SMc04339 overlap by 8 nucleotides
SMc04334: SMc04334 - formyltransferase, at 2,142,915 to 2,143,715
SMc04334
SMc05020: SMc05020 - entericidin A precursor, at 2,143,733 to 2,143,879
SMc05020
SMc04335: SMc04335 - lipoprotein transmembrane, at 2,144,024 to 2,144,197
SMc04335
SMc04336: SMc04336 - transmembrane signal peptide protein, at 2,144,290 to 2,144,757
SMc04336
SMc04337: SMc04337 - hypothetical protein, at 2,145,064 to 2,145,366
SMc04337
SMc04339: SMc04339 - hypothetical protein, at 2,145,359 to 2,145,946
SMc04339
Position (kb)
2144
2145 Strain fitness (log2 ratio)
-2
-1
0
1 at 2143.309 kb on + strand, within SMc04334 at 2143.416 kb on + strand, within SMc04334 at 2143.504 kb on - strand, within SMc04334 at 2143.504 kb on - strand, within SMc04334 at 2143.548 kb on + strand, within SMc04334 at 2143.548 kb on + strand, within SMc04334 at 2143.549 kb on - strand, within SMc04334 at 2143.549 kb on - strand, within SMc04334 at 2143.659 kb on + strand at 2143.660 kb on - strand at 2143.713 kb on + strand at 2143.854 kb on - strand, within SMc05020 at 2143.854 kb on - strand, within SMc05020 at 2143.865 kb on + strand at 2143.866 kb on - strand at 2143.866 kb on - strand at 2143.981 kb on + strand at 2143.981 kb on + strand at 2143.982 kb on - strand at 2143.984 kb on + strand at 2143.988 kb on + strand at 2143.988 kb on + strand at 2143.989 kb on - strand at 2144.192 kb on + strand at 2144.193 kb on - strand at 2144.294 kb on + strand at 2144.295 kb on - strand at 2144.295 kb on - strand at 2144.295 kb on - strand at 2144.295 kb on - strand at 2144.297 kb on + strand at 2144.298 kb on - strand at 2144.307 kb on - strand at 2144.330 kb on + strand at 2144.378 kb on + strand, within SMc04336 at 2144.378 kb on + strand, within SMc04336 at 2144.379 kb on - strand, within SMc04336 at 2144.420 kb on + strand, within SMc04336 at 2144.469 kb on + strand, within SMc04336 at 2144.537 kb on + strand, within SMc04336 at 2144.537 kb on + strand, within SMc04336 at 2144.538 kb on - strand, within SMc04336 at 2144.559 kb on + strand, within SMc04336 at 2144.560 kb on - strand, within SMc04336 at 2144.561 kb on + strand, within SMc04336 at 2144.561 kb on + strand, within SMc04336 at 2144.561 kb on + strand, within SMc04336 at 2144.561 kb on + strand, within SMc04336 at 2144.561 kb on + strand, within SMc04336 at 2144.706 kb on - strand, within SMc04336 at 2144.775 kb on - strand at 2144.779 kb on + strand at 2144.835 kb on + strand at 2144.837 kb on - strand at 2144.842 kb on + strand at 2144.843 kb on - strand at 2144.843 kb on - strand at 2144.988 kb on + strand at 2144.988 kb on + strand at 2144.988 kb on + strand at 2145.045 kb on - strand at 2145.217 kb on + strand, within SMc04337 at 2145.217 kb on + strand, within SMc04337 at 2145.218 kb on - strand, within SMc04337 at 2145.218 kb on - strand, within SMc04337 at 2145.218 kb on - strand, within SMc04337 at 2145.422 kb on + strand, within SMc04339 at 2145.423 kb on - strand, within SMc04339 at 2145.424 kb on + strand, within SMc04339 at 2145.424 kb on + strand, within SMc04339 at 2145.424 kb on + strand, within SMc04339 at 2145.424 kb on + strand, within SMc04339 at 2145.425 kb on - strand, within SMc04339 at 2145.425 kb on - strand, within SMc04339 at 2145.425 kb on - strand, within SMc04339 at 2145.425 kb on - strand, within SMc04339 at 2145.467 kb on + strand, within SMc04339 at 2145.468 kb on - strand, within SMc04339 at 2145.518 kb on + strand, within SMc04339 at 2145.519 kb on - strand, within SMc04339 at 2145.519 kb on - strand, within SMc04339 at 2145.519 kb on - strand, within SMc04339 at 2145.519 kb on - strand, within SMc04339 at 2145.733 kb on - strand, within SMc04339
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 2,143,309 + SMc04334 0.49 +0.9 2,143,416 + SMc04334 0.63 -1.2 2,143,504 - SMc04334 0.74 -0.3 2,143,504 - SMc04334 0.74 -0.6 2,143,548 + SMc04334 0.79 -2.6 2,143,548 + SMc04334 0.79 +0.0 2,143,549 - SMc04334 0.79 -0.0 2,143,549 - SMc04334 0.79 -1.7 2,143,659 + +0.2 2,143,660 - +0.5 2,143,713 + -1.1 2,143,854 - SMc05020 0.82 -1.0 2,143,854 - SMc05020 0.82 -0.9 2,143,865 + +0.1 2,143,866 - -1.5 2,143,866 - +0.4 2,143,981 + +1.4 2,143,981 + +0.1 2,143,982 - +0.5 2,143,984 + -2.1 2,143,988 + -0.9 2,143,988 + +0.3 2,143,989 - -0.0 2,144,192 + -1.7 2,144,193 - +0.1 2,144,294 + +0.8 2,144,295 - -0.9 2,144,295 - -1.4 2,144,295 - +0.5 2,144,295 - -0.3 2,144,297 + -0.2 2,144,298 - +0.5 2,144,307 - -0.9 2,144,330 + +0.5 2,144,378 + SMc04336 0.19 -0.7 2,144,378 + SMc04336 0.19 +0.9 2,144,379 - SMc04336 0.19 -2.3 2,144,420 + SMc04336 0.28 +1.3 2,144,469 + SMc04336 0.38 +0.9 2,144,537 + SMc04336 0.53 -0.7 2,144,537 + SMc04336 0.53 -0.9 2,144,538 - SMc04336 0.53 -0.7 2,144,559 + SMc04336 0.57 -1.3 2,144,560 - SMc04336 0.58 +0.1 2,144,561 + SMc04336 0.58 +0.7 2,144,561 + SMc04336 0.58 -0.7 2,144,561 + SMc04336 0.58 -0.5 2,144,561 + SMc04336 0.58 -0.8 2,144,561 + SMc04336 0.58 -1.3 2,144,706 - SMc04336 0.89 -1.1 2,144,775 - -2.5 2,144,779 + -0.1 2,144,835 + -0.9 2,144,837 - -0.5 2,144,842 + -0.7 2,144,843 - -0.9 2,144,843 - +0.4 2,144,988 + -0.8 2,144,988 + -0.4 2,144,988 + -0.3 2,145,045 - -0.8 2,145,217 + SMc04337 0.50 -0.2 2,145,217 + SMc04337 0.50 -0.5 2,145,218 - SMc04337 0.51 -1.7 2,145,218 - SMc04337 0.51 -0.3 2,145,218 - SMc04337 0.51 -0.3 2,145,422 + SMc04339 0.11 -1.6 2,145,423 - SMc04339 0.11 -0.7 2,145,424 + SMc04339 0.11 -0.4 2,145,424 + SMc04339 0.11 -0.7 2,145,424 + SMc04339 0.11 -0.1 2,145,424 + SMc04339 0.11 +0.5 2,145,425 - SMc04339 0.11 +0.5 2,145,425 - SMc04339 0.11 -1.3 2,145,425 - SMc04339 0.11 -0.0 2,145,425 - SMc04339 0.11 -0.6 2,145,467 + SMc04339 0.18 -0.4 2,145,468 - SMc04339 0.19 -0.1 2,145,518 + SMc04339 0.27 +0.1 2,145,519 - SMc04339 0.27 -0.4 2,145,519 - SMc04339 0.27 -0.5 2,145,519 - SMc04339 0.27 -0.5 2,145,519 - SMc04339 0.27 -0.3 2,145,733 - SMc04339 0.64 -0.2
Or see this region's nucleotide sequence