Strain Fitness in Sinorhizobium meliloti 1021 around SMc04336

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04334 and SMc05020 are separated by 17 nucleotidesSMc05020 and SMc04335 are separated by 144 nucleotidesSMc04335 and SMc04336 are separated by 92 nucleotidesSMc04336 and SMc04337 are separated by 306 nucleotidesSMc04337 and SMc04339 overlap by 8 nucleotides SMc04334: SMc04334 - formyltransferase, at 2,142,915 to 2,143,715 SMc04334 SMc05020: SMc05020 - entericidin A precursor, at 2,143,733 to 2,143,879 SMc05020 SMc04335: SMc04335 - lipoprotein transmembrane, at 2,144,024 to 2,144,197 SMc04335 SMc04336: SMc04336 - transmembrane signal peptide protein, at 2,144,290 to 2,144,757 SMc04336 SMc04337: SMc04337 - hypothetical protein, at 2,145,064 to 2,145,366 SMc04337 SMc04339: SMc04339 - hypothetical protein, at 2,145,359 to 2,145,946 SMc04339 Position (kb) 2144 2145Strain fitness (log2 ratio) -2 -1 0 1at 2143.309 kb on + strand, within SMc04334at 2143.416 kb on + strand, within SMc04334at 2143.504 kb on - strand, within SMc04334at 2143.504 kb on - strand, within SMc04334at 2143.548 kb on + strand, within SMc04334at 2143.548 kb on + strand, within SMc04334at 2143.549 kb on - strand, within SMc04334at 2143.549 kb on - strand, within SMc04334at 2143.659 kb on + strandat 2143.660 kb on - strandat 2143.713 kb on + strandat 2143.854 kb on - strand, within SMc05020at 2143.854 kb on - strand, within SMc05020at 2143.865 kb on + strandat 2143.866 kb on - strandat 2143.866 kb on - strandat 2143.981 kb on + strandat 2143.981 kb on + strandat 2143.982 kb on - strandat 2143.984 kb on + strandat 2143.988 kb on + strandat 2143.988 kb on + strandat 2143.989 kb on - strandat 2144.192 kb on + strandat 2144.193 kb on - strandat 2144.294 kb on + strandat 2144.295 kb on - strandat 2144.295 kb on - strandat 2144.295 kb on - strandat 2144.295 kb on - strandat 2144.297 kb on + strandat 2144.298 kb on - strandat 2144.307 kb on - strandat 2144.330 kb on + strandat 2144.378 kb on + strand, within SMc04336at 2144.378 kb on + strand, within SMc04336at 2144.379 kb on - strand, within SMc04336at 2144.420 kb on + strand, within SMc04336at 2144.469 kb on + strand, within SMc04336at 2144.537 kb on + strand, within SMc04336at 2144.537 kb on + strand, within SMc04336at 2144.538 kb on - strand, within SMc04336at 2144.559 kb on + strand, within SMc04336at 2144.560 kb on - strand, within SMc04336at 2144.561 kb on + strand, within SMc04336at 2144.561 kb on + strand, within SMc04336at 2144.561 kb on + strand, within SMc04336at 2144.561 kb on + strand, within SMc04336at 2144.561 kb on + strand, within SMc04336at 2144.706 kb on - strand, within SMc04336at 2144.775 kb on - strandat 2144.779 kb on + strandat 2144.835 kb on + strandat 2144.837 kb on - strandat 2144.842 kb on + strandat 2144.843 kb on - strandat 2144.843 kb on - strandat 2144.988 kb on + strandat 2144.988 kb on + strandat 2144.988 kb on + strandat 2145.045 kb on - strandat 2145.217 kb on + strand, within SMc04337at 2145.217 kb on + strand, within SMc04337at 2145.218 kb on - strand, within SMc04337at 2145.218 kb on - strand, within SMc04337at 2145.218 kb on - strand, within SMc04337at 2145.422 kb on + strand, within SMc04339at 2145.423 kb on - strand, within SMc04339at 2145.424 kb on + strand, within SMc04339at 2145.424 kb on + strand, within SMc04339at 2145.424 kb on + strand, within SMc04339at 2145.424 kb on + strand, within SMc04339at 2145.425 kb on - strand, within SMc04339at 2145.425 kb on - strand, within SMc04339at 2145.425 kb on - strand, within SMc04339at 2145.425 kb on - strand, within SMc04339at 2145.467 kb on + strand, within SMc04339at 2145.468 kb on - strand, within SMc04339at 2145.518 kb on + strand, within SMc04339at 2145.519 kb on - strand, within SMc04339at 2145.519 kb on - strand, within SMc04339at 2145.519 kb on - strand, within SMc04339at 2145.519 kb on - strand, within SMc04339at 2145.733 kb on - strand, within SMc04339

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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2,143,309 + SMc04334 0.49 +0.9
2,143,416 + SMc04334 0.63 -1.2
2,143,504 - SMc04334 0.74 -0.3
2,143,504 - SMc04334 0.74 -0.6
2,143,548 + SMc04334 0.79 -2.6
2,143,548 + SMc04334 0.79 +0.0
2,143,549 - SMc04334 0.79 -0.0
2,143,549 - SMc04334 0.79 -1.7
2,143,659 + +0.2
2,143,660 - +0.5
2,143,713 + -1.1
2,143,854 - SMc05020 0.82 -1.0
2,143,854 - SMc05020 0.82 -0.9
2,143,865 + +0.1
2,143,866 - -1.5
2,143,866 - +0.4
2,143,981 + +1.4
2,143,981 + +0.1
2,143,982 - +0.5
2,143,984 + -2.1
2,143,988 + -0.9
2,143,988 + +0.3
2,143,989 - -0.0
2,144,192 + -1.7
2,144,193 - +0.1
2,144,294 + +0.8
2,144,295 - -0.9
2,144,295 - -1.4
2,144,295 - +0.5
2,144,295 - -0.3
2,144,297 + -0.2
2,144,298 - +0.5
2,144,307 - -0.9
2,144,330 + +0.5
2,144,378 + SMc04336 0.19 -0.7
2,144,378 + SMc04336 0.19 +0.9
2,144,379 - SMc04336 0.19 -2.3
2,144,420 + SMc04336 0.28 +1.3
2,144,469 + SMc04336 0.38 +0.9
2,144,537 + SMc04336 0.53 -0.7
2,144,537 + SMc04336 0.53 -0.9
2,144,538 - SMc04336 0.53 -0.7
2,144,559 + SMc04336 0.57 -1.3
2,144,560 - SMc04336 0.58 +0.1
2,144,561 + SMc04336 0.58 +0.7
2,144,561 + SMc04336 0.58 -0.7
2,144,561 + SMc04336 0.58 -0.5
2,144,561 + SMc04336 0.58 -0.8
2,144,561 + SMc04336 0.58 -1.3
2,144,706 - SMc04336 0.89 -1.1
2,144,775 - -2.5
2,144,779 + -0.1
2,144,835 + -0.9
2,144,837 - -0.5
2,144,842 + -0.7
2,144,843 - -0.9
2,144,843 - +0.4
2,144,988 + -0.8
2,144,988 + -0.4
2,144,988 + -0.3
2,145,045 - -0.8
2,145,217 + SMc04337 0.50 -0.2
2,145,217 + SMc04337 0.50 -0.5
2,145,218 - SMc04337 0.51 -1.7
2,145,218 - SMc04337 0.51 -0.3
2,145,218 - SMc04337 0.51 -0.3
2,145,422 + SMc04339 0.11 -1.6
2,145,423 - SMc04339 0.11 -0.7
2,145,424 + SMc04339 0.11 -0.4
2,145,424 + SMc04339 0.11 -0.7
2,145,424 + SMc04339 0.11 -0.1
2,145,424 + SMc04339 0.11 +0.5
2,145,425 - SMc04339 0.11 +0.5
2,145,425 - SMc04339 0.11 -1.3
2,145,425 - SMc04339 0.11 -0.0
2,145,425 - SMc04339 0.11 -0.6
2,145,467 + SMc04339 0.18 -0.4
2,145,468 - SMc04339 0.19 -0.1
2,145,518 + SMc04339 0.27 +0.1
2,145,519 - SMc04339 0.27 -0.4
2,145,519 - SMc04339 0.27 -0.5
2,145,519 - SMc04339 0.27 -0.5
2,145,519 - SMc04339 0.27 -0.3
2,145,733 - SMc04339 0.64 -0.2

Or see this region's nucleotide sequence