Strain Fitness in Sinorhizobium meliloti 1021 around SMc04264

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04263 and SMc04264 are separated by 81 nucleotidesSMc04264 and SMc04265 are separated by 132 nucleotidesSMc04265 and SMc04266 overlap by 17 nucleotides SMc04263: SMc04263 - amino acid carrier transmembrane protein, at 2,092,873 to 2,094,291 SMc04263 SMc04264: SMc04264 - transcriptional regulator, at 2,094,373 to 2,095,263 SMc04264 SMc04265: SMc04265 - hypothetical protein, at 2,095,396 to 2,095,839 SMc04265 SMc04266: SMc04266 - hypothetical protein, at 2,095,823 to 2,096,176 SMc04266 Position (kb) 2094 2095 2096Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2093.516 kb on - strand, within SMc04263at 2093.534 kb on - strand, within SMc04263at 2093.570 kb on + strand, within SMc04263at 2093.571 kb on - strand, within SMc04263at 2093.733 kb on - strand, within SMc04263at 2093.792 kb on + strand, within SMc04263at 2093.899 kb on - strand, within SMc04263at 2093.917 kb on + strand, within SMc04263at 2093.918 kb on - strand, within SMc04263at 2093.918 kb on - strand, within SMc04263at 2093.918 kb on - strand, within SMc04263at 2093.971 kb on + strand, within SMc04263at 2093.971 kb on + strand, within SMc04263at 2093.972 kb on - strand, within SMc04263at 2093.972 kb on - strand, within SMc04263at 2093.977 kb on + strand, within SMc04263at 2093.999 kb on - strand, within SMc04263at 2094.027 kb on + strand, within SMc04263at 2094.027 kb on + strand, within SMc04263at 2094.073 kb on + strand, within SMc04263at 2094.074 kb on - strand, within SMc04263at 2094.074 kb on - strand, within SMc04263at 2094.081 kb on + strand, within SMc04263at 2094.081 kb on + strand, within SMc04263at 2094.190 kb on + strandat 2094.191 kb on - strandat 2094.205 kb on - strandat 2094.205 kb on - strandat 2094.290 kb on - strandat 2094.395 kb on - strandat 2094.484 kb on + strand, within SMc04264at 2094.604 kb on + strand, within SMc04264at 2094.875 kb on + strand, within SMc04264at 2095.136 kb on - strand, within SMc04264at 2095.320 kb on + strandat 2095.370 kb on + strandat 2095.370 kb on + strandat 2095.370 kb on + strandat 2095.371 kb on - strandat 2095.371 kb on - strandat 2095.373 kb on - strandat 2095.456 kb on + strand, within SMc04265at 2095.456 kb on + strand, within SMc04265at 2095.457 kb on - strand, within SMc04265at 2095.457 kb on - strand, within SMc04265at 2095.457 kb on - strand, within SMc04265at 2095.822 kb on - strandat 2095.837 kb on + strandat 2095.838 kb on - strandat 2095.850 kb on - strandat 2095.856 kb on + strandat 2095.857 kb on - strandat 2095.857 kb on - strandat 2096.030 kb on + strand, within SMc04266at 2096.031 kb on - strand, within SMc04266at 2096.095 kb on + strand, within SMc04266at 2096.096 kb on - strand, within SMc04266at 2096.096 kb on - strand, within SMc04266at 2096.148 kb on - strandat 2096.181 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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2,093,516 - SMc04263 0.45 +1.1
2,093,534 - SMc04263 0.47 -0.6
2,093,570 + SMc04263 0.49 +0.3
2,093,571 - SMc04263 0.49 -0.8
2,093,733 - SMc04263 0.61 +0.8
2,093,792 + SMc04263 0.65 +0.1
2,093,899 - SMc04263 0.72 +0.9
2,093,917 + SMc04263 0.74 -0.8
2,093,918 - SMc04263 0.74 -1.5
2,093,918 - SMc04263 0.74 -1.2
2,093,918 - SMc04263 0.74 +0.8
2,093,971 + SMc04263 0.77 -1.1
2,093,971 + SMc04263 0.77 -0.5
2,093,972 - SMc04263 0.77 -0.6
2,093,972 - SMc04263 0.77 +0.7
2,093,977 + SMc04263 0.78 +0.4
2,093,999 - SMc04263 0.79 -1.0
2,094,027 + SMc04263 0.81 +0.4
2,094,027 + SMc04263 0.81 +1.2
2,094,073 + SMc04263 0.85 +0.2
2,094,074 - SMc04263 0.85 -1.9
2,094,074 - SMc04263 0.85 +0.9
2,094,081 + SMc04263 0.85 +1.1
2,094,081 + SMc04263 0.85 +0.9
2,094,190 + +0.1
2,094,191 - +0.1
2,094,205 - +1.1
2,094,205 - -0.4
2,094,290 - +0.2
2,094,395 - +0.3
2,094,484 + SMc04264 0.12 +3.5
2,094,604 + SMc04264 0.26 +0.3
2,094,875 + SMc04264 0.56 -0.5
2,095,136 - SMc04264 0.86 +0.9
2,095,320 + +1.4
2,095,370 + -0.3
2,095,370 + -1.0
2,095,370 + +0.2
2,095,371 - -4.1
2,095,371 - -0.8
2,095,373 - +0.9
2,095,456 + SMc04265 0.14 -0.1
2,095,456 + SMc04265 0.14 +0.9
2,095,457 - SMc04265 0.14 -0.5
2,095,457 - SMc04265 0.14 -1.1
2,095,457 - SMc04265 0.14 +0.6
2,095,822 - -0.6
2,095,837 + +0.3
2,095,838 - +0.3
2,095,850 - +0.3
2,095,856 + +1.0
2,095,857 - +0.1
2,095,857 - -0.1
2,096,030 + SMc04266 0.58 -0.2
2,096,031 - SMc04266 0.59 -0.1
2,096,095 + SMc04266 0.77 -2.3
2,096,096 - SMc04266 0.77 -1.5
2,096,096 - SMc04266 0.77 -0.6
2,096,148 - +0.1
2,096,181 - +0.5

Or see this region's nucleotide sequence