Strain Fitness in Sinorhizobium meliloti 1021 around SMc03175

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03173 and SMc03174 are separated by 169 nucleotidesSMc03174 and SMc03175 are separated by 199 nucleotidesSMc03175 and SMc03176 are separated by 182 nucleotides SMc03173: SMc03173 - lysyl-tRNA synthetase, at 3,134,551 to 3,136,047 SMc03173 SMc03174: SMc03174 - hypothetical protein, at 3,136,217 to 3,136,837 SMc03174 SMc03175: SMc03175 - nucleoside hydrolase, at 3,137,037 to 3,137,990 SMc03175 SMc03176: SMc03176 - hypothetical protein, at 3,138,173 to 3,139,183 SMc03176 Position (kb) 3137 3138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3136.390 kb on + strand, within SMc03174at 3136.390 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.393 kb on - strand, within SMc03174at 3136.393 kb on - strand, within SMc03174at 3136.393 kb on - strand, within SMc03174at 3136.719 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.898 kb on + strandat 3137.001 kb on + strandat 3137.036 kb on + strandat 3137.326 kb on + strand, within SMc03175at 3137.327 kb on - strand, within SMc03175at 3137.327 kb on - strand, within SMc03175at 3137.327 kb on - strand, within SMc03175at 3137.483 kb on - strand, within SMc03175at 3137.713 kb on - strand, within SMc03175at 3137.713 kb on - strand, within SMc03175at 3137.778 kb on + strand, within SMc03175at 3137.778 kb on + strand, within SMc03175at 3137.778 kb on + strand, within SMc03175at 3137.779 kb on - strand, within SMc03175at 3138.023 kb on - strandat 3138.050 kb on + strandat 3138.050 kb on + strandat 3138.160 kb on + strandat 3138.160 kb on + strandat 3138.166 kb on + strandat 3138.172 kb on + strandat 3138.172 kb on + strandat 3138.173 kb on - strandat 3138.216 kb on - strandat 3138.236 kb on + strandat 3138.518 kb on + strand, within SMc03176at 3138.733 kb on - strand, within SMc03176at 3138.746 kb on + strand, within SMc03176at 3138.746 kb on + strand, within SMc03176at 3138.746 kb on + strand, within SMc03176at 3138.794 kb on + strand, within SMc03176at 3138.795 kb on - strand, within SMc03176

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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3,136,390 + SMc03174 0.28 -0.4
3,136,390 + SMc03174 0.28 +1.5
3,136,392 + SMc03174 0.28 +0.4
3,136,392 + SMc03174 0.28 +0.2
3,136,392 + SMc03174 0.28 -1.2
3,136,392 + SMc03174 0.28 -0.3
3,136,393 - SMc03174 0.28 -1.1
3,136,393 - SMc03174 0.28 +0.5
3,136,393 - SMc03174 0.28 -0.7
3,136,719 - SMc03174 0.81 +1.1
3,136,738 - SMc03174 0.84 -0.7
3,136,738 - SMc03174 0.84 -0.1
3,136,738 - SMc03174 0.84 -1.7
3,136,738 - SMc03174 0.84 -3.6
3,136,898 + -0.5
3,137,001 + -0.2
3,137,036 + +0.3
3,137,326 + SMc03175 0.30 -0.1
3,137,327 - SMc03175 0.30 +1.4
3,137,327 - SMc03175 0.30 +0.2
3,137,327 - SMc03175 0.30 +0.3
3,137,483 - SMc03175 0.47 +0.4
3,137,713 - SMc03175 0.71 -1.7
3,137,713 - SMc03175 0.71 +0.7
3,137,778 + SMc03175 0.78 +0.1
3,137,778 + SMc03175 0.78 +0.3
3,137,778 + SMc03175 0.78 +1.6
3,137,779 - SMc03175 0.78 -2.1
3,138,023 - +0.4
3,138,050 + +0.6
3,138,050 + -1.9
3,138,160 + -0.3
3,138,160 + -1.4
3,138,166 + +2.4
3,138,172 + -0.6
3,138,172 + -1.1
3,138,173 - -0.6
3,138,216 - -0.7
3,138,236 + -0.1
3,138,518 + SMc03176 0.34 -0.2
3,138,733 - SMc03176 0.55 +1.6
3,138,746 + SMc03176 0.57 -1.7
3,138,746 + SMc03176 0.57 -2.4
3,138,746 + SMc03176 0.57 -0.4
3,138,794 + SMc03176 0.61 -0.6
3,138,795 - SMc03176 0.62 -1.4

Or see this region's nucleotide sequence