Strain Fitness in Sinorhizobium meliloti 1021 around SMc03165

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03164 and SMc03165 are separated by 9 nucleotidesSMc03165 and SMc03166 are separated by 95 nucleotides SMc03164: SMc03164 - Xylulose kinase (EC 2.7.1.17) (from data), at 3,123,303 to 3,124,757 SMc03164 SMc03165: SMc03165 - Novel Xylose regulator from LacI family (from data), at 3,124,767 to 3,125,804 SMc03165 SMc03166: SMc03166 - hypothetical protein, at 3,125,900 to 3,126,985 SMc03166 Position (kb) 3124 3125 3126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3123.955 kb on + strand, within SMc03164at 3123.955 kb on + strand, within SMc03164at 3123.956 kb on - strand, within SMc03164at 3123.956 kb on - strand, within SMc03164at 3123.956 kb on - strand, within SMc03164at 3124.220 kb on + strand, within SMc03164at 3124.262 kb on + strand, within SMc03164at 3124.262 kb on + strand, within SMc03164at 3124.262 kb on + strand, within SMc03164at 3124.262 kb on + strand, within SMc03164at 3124.263 kb on - strand, within SMc03164at 3124.263 kb on - strand, within SMc03164at 3124.308 kb on + strand, within SMc03164at 3124.470 kb on + strand, within SMc03164at 3124.470 kb on + strand, within SMc03164at 3124.470 kb on + strand, within SMc03164at 3124.471 kb on - strand, within SMc03164at 3124.471 kb on - strand, within SMc03164at 3124.471 kb on - strand, within SMc03164at 3124.471 kb on - strand, within SMc03164at 3124.768 kb on + strandat 3124.768 kb on + strandat 3124.768 kb on + strandat 3124.769 kb on - strandat 3125.047 kb on + strand, within SMc03165at 3125.047 kb on + strand, within SMc03165at 3125.048 kb on - strand, within SMc03165at 3125.357 kb on + strand, within SMc03165at 3125.466 kb on + strand, within SMc03165at 3125.466 kb on + strand, within SMc03165at 3125.467 kb on - strand, within SMc03165at 3125.624 kb on - strand, within SMc03165at 3125.827 kb on + strandat 3125.827 kb on + strandat 3125.827 kb on + strandat 3125.828 kb on - strandat 3125.972 kb on + strandat 3125.973 kb on - strandat 3126.063 kb on + strand, within SMc03166at 3126.064 kb on - strand, within SMc03166at 3126.064 kb on - strand, within SMc03166at 3126.064 kb on - strand, within SMc03166at 3126.114 kb on + strand, within SMc03166at 3126.115 kb on - strand, within SMc03166at 3126.243 kb on + strand, within SMc03166at 3126.243 kb on + strand, within SMc03166at 3126.243 kb on + strand, within SMc03166at 3126.393 kb on + strand, within SMc03166at 3126.393 kb on + strand, within SMc03166at 3126.393 kb on + strand, within SMc03166at 3126.394 kb on - strand, within SMc03166at 3126.442 kb on - strandat 3126.464 kb on - strand, within SMc03166at 3126.474 kb on + strand, within SMc03166at 3126.555 kb on + strand, within SMc03166at 3126.617 kb on + strand, within SMc03166

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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3,123,955 + SMc03164 0.45 +1.4
3,123,955 + SMc03164 0.45 -0.7
3,123,956 - SMc03164 0.45 +0.2
3,123,956 - SMc03164 0.45 +1.0
3,123,956 - SMc03164 0.45 +0.7
3,124,220 + SMc03164 0.63 +0.9
3,124,262 + SMc03164 0.66 -0.3
3,124,262 + SMc03164 0.66 -0.2
3,124,262 + SMc03164 0.66 -1.5
3,124,262 + SMc03164 0.66 +0.3
3,124,263 - SMc03164 0.66 +0.9
3,124,263 - SMc03164 0.66 -0.4
3,124,308 + SMc03164 0.69 +0.2
3,124,470 + SMc03164 0.80 -0.3
3,124,470 + SMc03164 0.80 +0.5
3,124,470 + SMc03164 0.80 +2.5
3,124,471 - SMc03164 0.80 -0.5
3,124,471 - SMc03164 0.80 +0.1
3,124,471 - SMc03164 0.80 +0.8
3,124,471 - SMc03164 0.80 +0.1
3,124,768 + -2.6
3,124,768 + -0.0
3,124,768 + -0.7
3,124,769 - +0.3
3,125,047 + SMc03165 0.27 +0.2
3,125,047 + SMc03165 0.27 +0.6
3,125,048 - SMc03165 0.27 +0.4
3,125,357 + SMc03165 0.57 -3.2
3,125,466 + SMc03165 0.67 +0.7
3,125,466 + SMc03165 0.67 -0.1
3,125,467 - SMc03165 0.67 +0.7
3,125,624 - SMc03165 0.83 +2.5
3,125,827 + -0.7
3,125,827 + +0.7
3,125,827 + +0.6
3,125,828 - +0.3
3,125,972 + +1.6
3,125,973 - +0.6
3,126,063 + SMc03166 0.15 +0.1
3,126,064 - SMc03166 0.15 +0.8
3,126,064 - SMc03166 0.15 -1.0
3,126,064 - SMc03166 0.15 -0.9
3,126,114 + SMc03166 0.20 +0.2
3,126,115 - SMc03166 0.20 -0.2
3,126,243 + SMc03166 0.32 +1.0
3,126,243 + SMc03166 0.32 +0.4
3,126,243 + SMc03166 0.32 -0.2
3,126,393 + SMc03166 0.45 -0.1
3,126,393 + SMc03166 0.45 -0.5
3,126,393 + SMc03166 0.45 -0.2
3,126,394 - SMc03166 0.45 -0.6
3,126,442 - -0.1
3,126,464 - SMc03166 0.52 +1.5
3,126,474 + SMc03166 0.53 -1.6
3,126,555 + SMc03166 0.60 +0.6
3,126,617 + SMc03166 0.66 +1.9

Or see this region's nucleotide sequence