Strain Fitness in Sinorhizobium meliloti 1021 around SMc02484

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02486 and SMc02485 overlap by 4 nucleotidesSMc02485 and SMc02484 overlap by 1 nucleotidesSMc02484 and SMc02483 are separated by 255 nucleotides SMc02486: SMc02486 - oxidoreductase, at 3,309,557 to 3,310,309 SMc02486 SMc02485: SMc02485 - signal peptide protein, at 3,310,306 to 3,310,806 SMc02485 SMc02484: SMc02484 - amino acid efflux transmembrane protein, at 3,310,806 to 3,311,450 SMc02484 SMc02483: SMc02483 - dihydrolipoamide succinyltransferase, at 3,311,706 to 3,312,959 SMc02483 Position (kb) 3310 3311 3312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3309.835 kb on - strand, within SMc02486at 3309.844 kb on - strand, within SMc02486at 3309.844 kb on - strand, within SMc02486at 3310.207 kb on - strand, within SMc02486at 3310.207 kb on - strand, within SMc02486at 3310.207 kb on - strand, within SMc02486at 3310.354 kb on - strandat 3310.354 kb on - strandat 3310.354 kb on - strandat 3310.482 kb on - strand, within SMc02485at 3310.695 kb on - strand, within SMc02485at 3311.237 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.441 kb on - strandat 3311.469 kb on - strandat 3311.518 kb on - strandat 3311.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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3,309,835 - SMc02486 0.37 +0.7
3,309,844 - SMc02486 0.38 -0.6
3,309,844 - SMc02486 0.38 -1.5
3,310,207 - SMc02486 0.86 -0.1
3,310,207 - SMc02486 0.86 +0.1
3,310,207 - SMc02486 0.86 -2.8
3,310,354 - -0.1
3,310,354 - -2.7
3,310,354 - -1.1
3,310,482 - SMc02485 0.35 -0.5
3,310,695 - SMc02485 0.78 +0.0
3,311,237 - SMc02484 0.67 -0.4
3,311,279 - SMc02484 0.73 -1.8
3,311,279 - SMc02484 0.73 -2.1
3,311,279 - SMc02484 0.73 -1.9
3,311,279 - SMc02484 0.73 -4.3
3,311,441 - -2.8
3,311,469 - +2.9
3,311,518 - -1.1
3,311,692 - -1.2

Or see this region's nucleotide sequence