Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00946 and SMc00947 are separated by 346 nucleotides SMc00947 and SMc00948 are separated by 82 nucleotides
SMc00946: SMc00946 - hypothetical protein, at 1,772,508 to 1,773,992
SMc00946
SMc00947: SMc00947 - nitrogen regulatory protein PII, at 1,774,339 to 1,774,677
SMc00947
SMc00948: SMc00948 - glutamine synthetase, at 1,774,760 to 1,776,169
SMc00948
Position (kb)
1774
1775 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1773.351 kb on - strand, within SMc00946 at 1773.510 kb on + strand, within SMc00946 at 1773.510 kb on + strand, within SMc00946 at 1773.511 kb on - strand, within SMc00946 at 1773.676 kb on - strand, within SMc00946 at 1773.676 kb on - strand, within SMc00946 at 1773.789 kb on - strand, within SMc00946 at 1773.790 kb on + strand, within SMc00946 at 1773.790 kb on + strand, within SMc00946 at 1773.791 kb on - strand, within SMc00946 at 1773.908 kb on + strand at 1773.908 kb on + strand at 1773.908 kb on + strand at 1773.909 kb on - strand at 1773.909 kb on - strand at 1774.003 kb on + strand at 1774.081 kb on + strand at 1774.094 kb on - strand at 1774.210 kb on + strand at 1774.271 kb on + strand at 1774.279 kb on + strand at 1774.279 kb on + strand at 1774.279 kb on + strand at 1774.279 kb on + strand at 1774.279 kb on + strand at 1774.698 kb on + strand at 1774.816 kb on - strand at 1774.942 kb on + strand, within SMc00948 at 1774.990 kb on + strand, within SMc00948 at 1774.991 kb on - strand, within SMc00948 at 1775.064 kb on - strand, within SMc00948 at 1775.064 kb on - strand, within SMc00948 at 1775.105 kb on + strand, within SMc00948 at 1775.143 kb on - strand, within SMc00948 at 1775.184 kb on - strand, within SMc00948 at 1775.184 kb on - strand, within SMc00948 at 1775.199 kb on - strand, within SMc00948 at 1775.256 kb on - strand, within SMc00948 at 1775.300 kb on + strand, within SMc00948 at 1775.474 kb on + strand, within SMc00948 at 1775.474 kb on + strand, within SMc00948 at 1775.475 kb on - strand, within SMc00948 at 1775.475 kb on - strand, within SMc00948 at 1775.480 kb on + strand, within SMc00948 at 1775.481 kb on - strand, within SMc00948 at 1775.508 kb on - strand, within SMc00948 at 1775.649 kb on - strand, within SMc00948
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,773,351 - SMc00946 0.57 -0.3 1,773,510 + SMc00946 0.67 +1.0 1,773,510 + SMc00946 0.67 -2.1 1,773,511 - SMc00946 0.68 +0.5 1,773,676 - SMc00946 0.79 -1.0 1,773,676 - SMc00946 0.79 -1.6 1,773,789 - SMc00946 0.86 +0.1 1,773,790 + SMc00946 0.86 -0.8 1,773,790 + SMc00946 0.86 -0.0 1,773,791 - SMc00946 0.86 -1.2 1,773,908 + +0.1 1,773,908 + +0.6 1,773,908 + +0.7 1,773,909 - +0.4 1,773,909 - -1.6 1,774,003 + +2.0 1,774,081 + -1.5 1,774,094 - +0.1 1,774,210 + -0.0 1,774,271 + -0.1 1,774,279 + -1.1 1,774,279 + -0.1 1,774,279 + +1.0 1,774,279 + +0.3 1,774,279 + -0.3 1,774,698 + +0.5 1,774,816 - -0.3 1,774,942 + SMc00948 0.13 -3.3 1,774,990 + SMc00948 0.16 -3.0 1,774,991 - SMc00948 0.16 -1.9 1,775,064 - SMc00948 0.22 -0.7 1,775,064 - SMc00948 0.22 -0.6 1,775,105 + SMc00948 0.24 -0.7 1,775,143 - SMc00948 0.27 -2.0 1,775,184 - SMc00948 0.30 -0.5 1,775,184 - SMc00948 0.30 +1.0 1,775,199 - SMc00948 0.31 -0.3 1,775,256 - SMc00948 0.35 -1.0 1,775,300 + SMc00948 0.38 -1.4 1,775,474 + SMc00948 0.51 -1.1 1,775,474 + SMc00948 0.51 -0.6 1,775,475 - SMc00948 0.51 -1.3 1,775,475 - SMc00948 0.51 -0.5 1,775,480 + SMc00948 0.51 -0.8 1,775,481 - SMc00948 0.51 -1.3 1,775,508 - SMc00948 0.53 -0.1 1,775,649 - SMc00948 0.63 -0.7
Or see this region's nucleotide sequence