Strain Fitness in Sinorhizobium meliloti 1021 around SMc00684

Experiment: Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00688 and SMc00687 are separated by 33 nucleotidesSMc00687 and SMc00686 overlap by 1 nucleotidesSMc00686 and SMc00684 are separated by 108 nucleotidesSMc00684 and SMc00683 are separated by 13 nucleotides SMc00688: SMc00688 - hypothetical protein, at 2,889,988 to 2,890,227 SMc00688 SMc00687: SMc00687 - hypothetical protein, at 2,890,261 to 2,890,659 SMc00687 SMc00686: SMc00686 - hypothetical protein, at 2,890,659 to 2,890,892 SMc00686 SMc00684: SMc00684 - hypothetical protein, at 2,891,001 to 2,892,146 SMc00684 SMc00683: SMc00683 - penicillin-binding protein, at 2,892,160 to 2,893,242 SMc00683 Position (kb) 2891 2892 2893Strain fitness (log2 ratio) -2 -1 0 1 2at 2890.007 kb on + strandat 2890.007 kb on + strandat 2890.221 kb on + strandat 2890.222 kb on - strandat 2890.222 kb on - strandat 2890.222 kb on - strandat 2890.309 kb on + strand, within SMc00687at 2890.311 kb on + strand, within SMc00687at 2890.311 kb on + strand, within SMc00687at 2890.312 kb on - strand, within SMc00687at 2890.312 kb on - strand, within SMc00687at 2890.312 kb on - strand, within SMc00687at 2890.312 kb on - strand, within SMc00687at 2890.422 kb on - strand, within SMc00687at 2890.488 kb on + strand, within SMc00687at 2890.526 kb on + strand, within SMc00687at 2890.527 kb on - strand, within SMc00687at 2890.527 kb on - strand, within SMc00687at 2890.531 kb on + strand, within SMc00687at 2890.531 kb on + strand, within SMc00687at 2890.532 kb on - strand, within SMc00687at 2890.555 kb on + strand, within SMc00687at 2890.555 kb on + strand, within SMc00687at 2890.622 kb on + strandat 2890.623 kb on - strandat 2890.623 kb on - strandat 2890.623 kb on - strandat 2890.647 kb on + strandat 2890.647 kb on + strandat 2890.648 kb on - strandat 2890.649 kb on + strandat 2890.649 kb on + strandat 2890.649 kb on + strandat 2890.649 kb on + strandat 2890.650 kb on - strandat 2890.650 kb on - strandat 2890.650 kb on - strandat 2890.650 kb on - strandat 2890.650 kb on - strandat 2890.876 kb on - strandat 2891.259 kb on - strand, within SMc00684at 2891.524 kb on + strand, within SMc00684at 2891.525 kb on - strand, within SMc00684

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
remove
2,890,007 + -0.3
2,890,007 + -0.3
2,890,221 + +0.4
2,890,222 - +1.9
2,890,222 - -1.3
2,890,222 - +0.4
2,890,309 + SMc00687 0.12 -0.7
2,890,311 + SMc00687 0.13 +1.0
2,890,311 + SMc00687 0.13 +0.9
2,890,312 - SMc00687 0.13 -0.1
2,890,312 - SMc00687 0.13 +0.3
2,890,312 - SMc00687 0.13 +1.1
2,890,312 - SMc00687 0.13 +0.3
2,890,422 - SMc00687 0.40 +0.3
2,890,488 + SMc00687 0.57 +0.3
2,890,526 + SMc00687 0.66 +2.2
2,890,527 - SMc00687 0.67 +0.2
2,890,527 - SMc00687 0.67 -0.3
2,890,531 + SMc00687 0.68 +0.4
2,890,531 + SMc00687 0.68 +0.1
2,890,532 - SMc00687 0.68 +0.5
2,890,555 + SMc00687 0.74 -0.5
2,890,555 + SMc00687 0.74 +0.6
2,890,622 + +0.4
2,890,623 - -1.6
2,890,623 - -0.3
2,890,623 - -0.9
2,890,647 + -1.3
2,890,647 + +0.0
2,890,648 - -2.6
2,890,649 + +0.6
2,890,649 + +0.2
2,890,649 + +1.7
2,890,649 + +0.1
2,890,650 - +1.2
2,890,650 - -1.1
2,890,650 - +0.3
2,890,650 - +0.6
2,890,650 - +0.5
2,890,876 - -0.2
2,891,259 - SMc00684 0.23 +0.4
2,891,524 + SMc00684 0.46 +1.7
2,891,525 - SMc00684 0.46 +1.1

Or see this region's nucleotide sequence