Strain Fitness in Sinorhizobium meliloti 1021 around SMc00581

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00580 and SMc00581 are separated by 9 nucleotidesSMc00581 and SMc00582 are separated by 191 nucleotides SMc00580: SMc00580 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,249,078 to 1,250,106 SMc00580 SMc00581: SMc00581 - hypothetical protein, at 1,250,116 to 1,251,066 SMc00581 SMc00582: SMc00582 - hypothetical protein, at 1,251,258 to 1,253,603 SMc00582 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1249.308 kb on - strand, within SMc00580at 1249.536 kb on - strand, within SMc00580at 1249.582 kb on - strand, within SMc00580at 1249.982 kb on - strand, within SMc00580at 1249.985 kb on + strand, within SMc00580at 1249.986 kb on - strand, within SMc00580at 1249.986 kb on - strand, within SMc00580at 1250.026 kb on + strandat 1250.118 kb on - strandat 1251.168 kb on - strandat 1251.196 kb on - strandat 1251.260 kb on - strandat 1251.260 kb on - strandat 1251.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,249,308 - SMc00580 0.22 -2.4
1,249,536 - SMc00580 0.45 -1.2
1,249,582 - SMc00580 0.49 -1.6
1,249,982 - SMc00580 0.88 -1.8
1,249,985 + SMc00580 0.88 -2.1
1,249,986 - SMc00580 0.88 -3.9
1,249,986 - SMc00580 0.88 -3.0
1,250,026 + -2.1
1,250,118 - +0.0
1,251,168 - +1.0
1,251,196 - -1.8
1,251,260 - +0.0
1,251,260 - -0.6
1,251,260 - -1.6

Or see this region's nucleotide sequence