Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00558 and SMc00559 are separated by 64 nucleotides SMc00559 and SMc00560 overlap by 4 nucleotides SMc00560 and SMc00561 are separated by 151 nucleotides
SMc00558: SMc00558 - transcriptional regulator, at 1,228,768 to 1,229,625
SMc00558
SMc00559: SMc00559 - hypothetical protein, at 1,229,690 to 1,230,460
SMc00559
SMc00560: SMc00560 - hypothetical protein, at 1,230,457 to 1,230,759
SMc00560
SMc00561: SMc00561 - replicative DNA helicase, at 1,230,911 to 1,232,410
SMc00561
Position (kb)
1229
1230
1231 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1228.756 kb on + strand at 1228.757 kb on - strand at 1228.929 kb on - strand, within SMc00558 at 1228.929 kb on - strand, within SMc00558 at 1228.929 kb on - strand, within SMc00558 at 1228.929 kb on - strand, within SMc00558 at 1229.002 kb on + strand, within SMc00558 at 1229.002 kb on + strand, within SMc00558 at 1229.002 kb on + strand, within SMc00558 at 1229.002 kb on + strand, within SMc00558 at 1229.003 kb on - strand, within SMc00558 at 1229.003 kb on - strand, within SMc00558 at 1229.003 kb on - strand, within SMc00558 at 1229.072 kb on - strand, within SMc00558 at 1229.072 kb on - strand, within SMc00558 at 1229.072 kb on - strand, within SMc00558 at 1229.099 kb on + strand, within SMc00558 at 1229.099 kb on + strand, within SMc00558 at 1229.100 kb on - strand, within SMc00558 at 1229.289 kb on + strand, within SMc00558 at 1229.290 kb on - strand, within SMc00558 at 1229.344 kb on + strand, within SMc00558 at 1229.344 kb on + strand, within SMc00558 at 1229.360 kb on - strand, within SMc00558 at 1229.536 kb on + strand, within SMc00558 at 1229.537 kb on - strand, within SMc00558 at 1229.661 kb on + strand at 1229.662 kb on - strand at 1229.662 kb on - strand at 1229.730 kb on + strand at 1229.743 kb on - strand at 1230.071 kb on + strand, within SMc00559 at 1230.072 kb on - strand, within SMc00559 at 1230.072 kb on - strand, within SMc00559 at 1230.155 kb on + strand, within SMc00559 at 1230.180 kb on - strand, within SMc00559 at 1230.180 kb on - strand, within SMc00559 at 1230.386 kb on + strand at 1230.387 kb on - strand at 1230.387 kb on - strand at 1230.558 kb on - strand, within SMc00560 at 1230.558 kb on - strand, within SMc00560 at 1230.757 kb on + strand at 1230.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,228,756 + +0.9 1,228,757 - -0.7 1,228,929 - SMc00558 0.19 -0.3 1,228,929 - SMc00558 0.19 +1.5 1,228,929 - SMc00558 0.19 -3.5 1,228,929 - SMc00558 0.19 -4.7 1,229,002 + SMc00558 0.27 -3.0 1,229,002 + SMc00558 0.27 -0.1 1,229,002 + SMc00558 0.27 -0.1 1,229,002 + SMc00558 0.27 -0.8 1,229,003 - SMc00558 0.27 -0.5 1,229,003 - SMc00558 0.27 -0.9 1,229,003 - SMc00558 0.27 -2.4 1,229,072 - SMc00558 0.35 -0.5 1,229,072 - SMc00558 0.35 -0.8 1,229,072 - SMc00558 0.35 -0.8 1,229,099 + SMc00558 0.39 -1.9 1,229,099 + SMc00558 0.39 -4.9 1,229,100 - SMc00558 0.39 +0.6 1,229,289 + SMc00558 0.61 +1.0 1,229,290 - SMc00558 0.61 +0.6 1,229,344 + SMc00558 0.67 -0.7 1,229,344 + SMc00558 0.67 +0.7 1,229,360 - SMc00558 0.69 +0.3 1,229,536 + SMc00558 0.90 -0.2 1,229,537 - SMc00558 0.90 +0.2 1,229,661 + +1.0 1,229,662 - +0.1 1,229,662 - +0.2 1,229,730 + -0.4 1,229,743 - +0.3 1,230,071 + SMc00559 0.49 -0.6 1,230,072 - SMc00559 0.50 -0.5 1,230,072 - SMc00559 0.50 +0.2 1,230,155 + SMc00559 0.60 +0.1 1,230,180 - SMc00559 0.64 +0.5 1,230,180 - SMc00559 0.64 -1.3 1,230,386 + -0.5 1,230,387 - -1.7 1,230,387 - +0.0 1,230,558 - SMc00560 0.33 +0.2 1,230,558 - SMc00560 0.33 +0.2 1,230,757 + -0.0 1,230,922 - -1.0
Or see this region's nucleotide sequence