Strain Fitness in Sinorhizobium meliloti 1021 around SMc00540

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00524 and SMc00523 are separated by 17 nucleotidesSMc00523 and SMc00540 overlap by 10 nucleotidesSMc00540 and SMc00539 are separated by 123 nucleotides SMc00524: SMc00524 - bacterioferritin comigratory protein, at 1,888,877 to 1,889,344 SMc00524 SMc00523: SMc00523 - hypothetical protein, at 1,889,362 to 1,889,880 SMc00523 SMc00540: SMc00540 - hypothetical protein, at 1,889,871 to 1,890,188 SMc00540 SMc00539: SMc00539 - hypothetical protein, at 1,890,312 to 1,891,637 SMc00539 Position (kb) 1889 1890 1891Strain fitness (log2 ratio) -3 -2 -1 0 1at 1888.975 kb on - strand, within SMc00524at 1889.002 kb on + strand, within SMc00524at 1889.027 kb on - strand, within SMc00524at 1889.080 kb on - strand, within SMc00524at 1889.085 kb on + strand, within SMc00524at 1889.218 kb on + strand, within SMc00524at 1889.219 kb on - strand, within SMc00524at 1889.222 kb on + strand, within SMc00524at 1889.222 kb on + strand, within SMc00524at 1889.222 kb on + strand, within SMc00524at 1889.223 kb on - strand, within SMc00524at 1889.223 kb on - strand, within SMc00524at 1889.223 kb on - strandat 1889.223 kb on - strand, within SMc00524at 1889.223 kb on - strand, within SMc00524at 1889.351 kb on - strandat 1889.351 kb on - strandat 1889.648 kb on + strand, within SMc00523at 1889.649 kb on - strand, within SMc00523at 1889.649 kb on - strand, within SMc00523at 1889.760 kb on - strand, within SMc00523at 1889.760 kb on - strand, within SMc00523at 1889.976 kb on + strand, within SMc00540at 1889.976 kb on + strand, within SMc00540at 1889.976 kb on + strand, within SMc00540at 1890.221 kb on + strandat 1890.221 kb on + strandat 1890.232 kb on - strandat 1890.232 kb on - strandat 1890.232 kb on - strandat 1890.232 kb on - strandat 1890.255 kb on + strandat 1890.255 kb on + strandat 1890.460 kb on - strand, within SMc00539at 1890.477 kb on + strand, within SMc00539at 1890.477 kb on + strand, within SMc00539at 1890.477 kb on + strand, within SMc00539at 1890.477 kb on + strand, within SMc00539at 1890.478 kb on - strand, within SMc00539at 1890.478 kb on - strand, within SMc00539at 1890.478 kb on - strand, within SMc00539at 1890.478 kb on - strand, within SMc00539at 1890.543 kb on + strand, within SMc00539at 1890.544 kb on - strand, within SMc00539at 1890.763 kb on - strand, within SMc00539at 1890.926 kb on + strand, within SMc00539at 1890.926 kb on + strand, within SMc00539at 1890.926 kb on + strand, within SMc00539at 1890.927 kb on - strand, within SMc00539

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,888,975 - SMc00524 0.21 +1.0
1,889,002 + SMc00524 0.27 -0.4
1,889,027 - SMc00524 0.32 -3.4
1,889,080 - SMc00524 0.43 -1.4
1,889,085 + SMc00524 0.44 +0.1
1,889,218 + SMc00524 0.73 +0.4
1,889,219 - SMc00524 0.73 -0.6
1,889,222 + SMc00524 0.74 -0.4
1,889,222 + SMc00524 0.74 -0.3
1,889,222 + SMc00524 0.74 -1.1
1,889,223 - SMc00524 0.74 +1.3
1,889,223 - SMc00524 0.74 +1.3
1,889,223 - -0.9
1,889,223 - SMc00524 0.74 +0.6
1,889,223 - SMc00524 0.74 -0.0
1,889,351 - -2.4
1,889,351 - -0.1
1,889,648 + SMc00523 0.55 +0.4
1,889,649 - SMc00523 0.55 -2.4
1,889,649 - SMc00523 0.55 -0.1
1,889,760 - SMc00523 0.77 -0.3
1,889,760 - SMc00523 0.77 -0.3
1,889,976 + SMc00540 0.33 -1.7
1,889,976 + SMc00540 0.33 +0.1
1,889,976 + SMc00540 0.33 -0.8
1,890,221 + -0.4
1,890,221 + +0.9
1,890,232 - +1.0
1,890,232 - -0.0
1,890,232 - +0.2
1,890,232 - -0.3
1,890,255 + -0.4
1,890,255 + -0.4
1,890,460 - SMc00539 0.11 -0.2
1,890,477 + SMc00539 0.12 +1.4
1,890,477 + SMc00539 0.12 +0.8
1,890,477 + SMc00539 0.12 +0.4
1,890,477 + SMc00539 0.12 +0.5
1,890,478 - SMc00539 0.13 -0.0
1,890,478 - SMc00539 0.13 -0.0
1,890,478 - SMc00539 0.13 -0.7
1,890,478 - SMc00539 0.13 +0.7
1,890,543 + SMc00539 0.17 -1.3
1,890,544 - SMc00539 0.17 -1.7
1,890,763 - SMc00539 0.34 +0.1
1,890,926 + SMc00539 0.46 -0.2
1,890,926 + SMc00539 0.46 -0.1
1,890,926 + SMc00539 0.46 -1.6
1,890,927 - SMc00539 0.46 -0.1

Or see this region's nucleotide sequence