Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00516 and SMc00515 are separated by 5 nucleotides SMc00515 and SMc00514 are separated by 24 nucleotides SMc00514 and SMc00513 are separated by 159 nucleotides
SMc00516: SMc00516 - hypothetical protein, at 1,896,805 to 1,898,067
SMc00516
SMc00515: SMc00515 - hypothetical protein, at 1,898,073 to 1,899,002
SMc00515
SMc00514: SMc00514 - monooxygenase, at 1,899,027 to 1,899,554
SMc00514
SMc00513: SMc00513 - amino acid-binding periplasmic protein, at 1,899,714 to 1,900,802
SMc00513
Position (kb)
1898
1899
1900 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1897.087 kb on - strand, within SMc00516 at 1897.305 kb on + strand, within SMc00516 at 1897.305 kb on + strand, within SMc00516 at 1897.306 kb on - strand, within SMc00516 at 1897.306 kb on - strand, within SMc00516 at 1897.354 kb on + strand, within SMc00516 at 1897.362 kb on + strand, within SMc00516 at 1897.364 kb on + strand, within SMc00516 at 1897.365 kb on - strand, within SMc00516 at 1897.365 kb on - strand, within SMc00516 at 1897.524 kb on - strand, within SMc00516 at 1897.652 kb on + strand, within SMc00516 at 1897.653 kb on - strand, within SMc00516 at 1897.653 kb on - strand, within SMc00516 at 1897.858 kb on + strand, within SMc00516 at 1897.908 kb on - strand, within SMc00516 at 1897.908 kb on - strand, within SMc00516 at 1898.171 kb on + strand, within SMc00515 at 1898.171 kb on + strand, within SMc00515 at 1898.302 kb on + strand, within SMc00515 at 1898.303 kb on - strand, within SMc00515 at 1898.303 kb on - strand, within SMc00515 at 1898.386 kb on + strand, within SMc00515 at 1898.637 kb on + strand, within SMc00515 at 1898.637 kb on + strand, within SMc00515 at 1898.637 kb on + strand, within SMc00515 at 1898.638 kb on - strand, within SMc00515 at 1898.734 kb on + strand, within SMc00515 at 1898.735 kb on - strand, within SMc00515 at 1898.820 kb on + strand, within SMc00515 at 1898.821 kb on - strand, within SMc00515 at 1898.821 kb on - strand, within SMc00515 at 1898.868 kb on + strand, within SMc00515 at 1898.929 kb on + strand at 1898.929 kb on + strand at 1899.028 kb on + strand at 1899.028 kb on + strand at 1899.056 kb on - strand at 1899.087 kb on + strand, within SMc00514 at 1899.087 kb on + strand, within SMc00514 at 1899.088 kb on - strand, within SMc00514 at 1899.487 kb on + strand, within SMc00514 at 1899.488 kb on - strand, within SMc00514 at 1899.540 kb on - strand at 1899.550 kb on + strand at 1899.550 kb on + strand at 1899.550 kb on + strand at 1899.550 kb on + strand at 1899.550 kb on + strand at 1899.550 kb on + strand at 1899.551 kb on - strand at 1899.551 kb on - strand at 1899.551 kb on - strand at 1899.551 kb on - strand at 1899.551 kb on - strand at 1899.551 kb on - strand at 1899.551 kb on - strand at 1899.551 kb on - strand at 1899.551 kb on - strand at 1899.551 kb on - strand at 1899.554 kb on + strand at 1899.555 kb on - strand at 1899.555 kb on - strand at 1899.555 kb on - strand at 1899.555 kb on - strand at 1899.683 kb on + strand at 1899.683 kb on + strand at 1899.684 kb on - strand at 1899.684 kb on - strand at 1899.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,897,087 - SMc00516 0.22 -0.6 1,897,305 + SMc00516 0.40 +0.6 1,897,305 + SMc00516 0.40 -0.7 1,897,306 - SMc00516 0.40 -0.8 1,897,306 - SMc00516 0.40 +0.0 1,897,354 + SMc00516 0.43 -0.7 1,897,362 + SMc00516 0.44 +3.0 1,897,364 + SMc00516 0.44 -1.0 1,897,365 - SMc00516 0.44 +1.6 1,897,365 - SMc00516 0.44 +0.1 1,897,524 - SMc00516 0.57 -1.0 1,897,652 + SMc00516 0.67 -0.2 1,897,653 - SMc00516 0.67 +0.4 1,897,653 - SMc00516 0.67 -0.6 1,897,858 + SMc00516 0.83 +0.2 1,897,908 - SMc00516 0.87 +0.1 1,897,908 - SMc00516 0.87 +0.5 1,898,171 + SMc00515 0.11 +0.2 1,898,171 + SMc00515 0.11 -0.6 1,898,302 + SMc00515 0.25 -0.4 1,898,303 - SMc00515 0.25 +0.9 1,898,303 - SMc00515 0.25 -1.7 1,898,386 + SMc00515 0.34 -1.7 1,898,637 + SMc00515 0.61 +0.2 1,898,637 + SMc00515 0.61 -1.0 1,898,637 + SMc00515 0.61 +0.1 1,898,638 - SMc00515 0.61 +0.5 1,898,734 + SMc00515 0.71 -1.9 1,898,735 - SMc00515 0.71 +0.3 1,898,820 + SMc00515 0.80 -0.9 1,898,821 - SMc00515 0.80 -1.3 1,898,821 - SMc00515 0.80 +0.6 1,898,868 + SMc00515 0.85 -0.9 1,898,929 + -0.1 1,898,929 + -1.1 1,899,028 + +0.2 1,899,028 + +0.8 1,899,056 - -3.0 1,899,087 + SMc00514 0.11 -3.6 1,899,087 + SMc00514 0.11 +1.0 1,899,088 - SMc00514 0.12 -0.1 1,899,487 + SMc00514 0.87 -0.2 1,899,488 - SMc00514 0.87 -0.5 1,899,540 - -0.3 1,899,550 + -4.0 1,899,550 + -1.8 1,899,550 + -0.1 1,899,550 + -0.4 1,899,550 + +3.2 1,899,550 + +0.5 1,899,551 - -3.5 1,899,551 - -2.4 1,899,551 - -0.2 1,899,551 - +0.5 1,899,551 - +0.3 1,899,551 - +0.2 1,899,551 - +2.2 1,899,551 - +0.3 1,899,551 - +1.4 1,899,551 - +0.1 1,899,554 + -3.0 1,899,555 - -0.5 1,899,555 - +0.4 1,899,555 - -0.3 1,899,555 - +0.4 1,899,683 + +0.6 1,899,683 + -1.0 1,899,684 - +0.8 1,899,684 - -0.6 1,899,720 - -0.1
Or see this region's nucleotide sequence