Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5020 and SMa0421 overlap by 13 nucleotides SMa0421 and SMa5021 overlap by 4 nucleotides SMa5021 and SMa0424 are separated by 34 nucleotides
SMa5020: SMa5020 - hypothetical protein, at 227,425 to 228,318
SMa5020
SMa0421: SMa0421 - hypothetical protein, at 228,306 to 228,824
SMa0421
SMa5021: SMa5021 - hypothetical protein, at 228,821 to 229,255
SMa5021
SMa0424: SMa0424 - ATP-dependent DNA ligase, at 229,290 to 230,330
SMa0424
Position (kb) 228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 227.975 kb on - strand, within SMa5020 at 228.094 kb on + strand, within SMa5020 at 228.112 kb on - strand, within SMa5020 at 228.121 kb on + strand, within SMa5020 at 228.122 kb on - strand, within SMa5020 at 228.122 kb on - strand, within SMa5020 at 228.612 kb on + strand, within SMa0421 at 228.699 kb on + strand, within SMa0421 at 228.699 kb on + strand, within SMa0421 at 228.700 kb on - strand, within SMa0421 at 228.700 kb on - strand, within SMa0421 at 228.789 kb on + strand at 228.790 kb on - strand at 228.848 kb on + strand at 228.849 kb on - strand at 228.849 kb on - strand at 228.973 kb on - strand, within SMa5021 at 228.991 kb on - strand, within SMa5021 at 229.042 kb on + strand, within SMa5021 at 229.042 kb on + strand, within SMa5021 at 229.208 kb on + strand, within SMa5021 at 229.210 kb on + strand, within SMa5021 at 229.223 kb on - strand at 229.357 kb on + strand at 229.357 kb on + strand at 229.469 kb on + strand, within SMa0424 at 229.469 kb on + strand, within SMa0424 at 229.470 kb on - strand, within SMa0424 at 229.520 kb on + strand, within SMa0424 at 229.524 kb on - strand, within SMa0424 at 229.662 kb on + strand, within SMa0424 at 229.882 kb on + strand, within SMa0424
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 227,975 - SMa5020 0.62 +0.2 228,094 + SMa5020 0.75 -0.4 228,112 - SMa5020 0.77 +0.5 228,121 + SMa5020 0.78 -0.9 228,122 - SMa5020 0.78 -0.7 228,122 - SMa5020 0.78 -1.6 228,612 + SMa0421 0.59 +0.1 228,699 + SMa0421 0.76 +0.8 228,699 + SMa0421 0.76 -1.7 228,700 - SMa0421 0.76 -0.5 228,700 - SMa0421 0.76 +0.3 228,789 + -2.9 228,790 - +0.5 228,848 + +0.1 228,849 - +1.8 228,849 - +0.2 228,973 - SMa5021 0.35 -0.2 228,991 - SMa5021 0.39 +0.9 229,042 + SMa5021 0.51 +2.1 229,042 + SMa5021 0.51 +1.1 229,208 + SMa5021 0.89 +0.7 229,210 + SMa5021 0.89 -2.6 229,223 - +1.0 229,357 + +0.2 229,357 + -0.1 229,469 + SMa0424 0.17 -0.3 229,469 + SMa0424 0.17 -0.8 229,470 - SMa0424 0.17 -0.5 229,520 + SMa0424 0.22 -0.8 229,524 - SMa0424 0.22 -0.5 229,662 + SMa0424 0.36 +1.3 229,882 + SMa0424 0.57 +0.4
Or see this region's nucleotide sequence