Strain Fitness in Sinorhizobium meliloti 1021 around SMa2349

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2347 and SMa2349 are separated by 359 nucleotidesSMa2349 and SMa2351 overlap by 4 nucleotidesSMa2351 and SMa2353 are separated by 4 nucleotides SMa2347: SMa2347 - hypothetical protein, at 1,322,021 to 1,322,701 SMa2347 SMa2349: SMa2349 - xanthine dehydrogenase iron-sulfur-binding subunit, at 1,323,061 to 1,323,708 SMa2349 SMa2351: SMa2351 - oxidoreductase, molybdopterin-binding subunit, at 1,323,705 to 1,324,655 SMa2351 SMa2353: SMa2353 - oxidoreductase, at 1,324,660 to 1,326,858 SMa2353 Position (kb) 1323 1324Strain fitness (log2 ratio) -2 -1 0 1 2at 1322.062 kb on - strandat 1322.245 kb on + strand, within SMa2347at 1322.245 kb on + strand, within SMa2347at 1322.246 kb on - strand, within SMa2347at 1322.388 kb on - strand, within SMa2347at 1322.391 kb on + strand, within SMa2347at 1322.392 kb on - strand, within SMa2347at 1322.647 kb on - strandat 1322.647 kb on - strandat 1322.732 kb on + strandat 1322.816 kb on - strandat 1322.862 kb on - strandat 1323.002 kb on - strandat 1323.015 kb on + strandat 1323.022 kb on + strandat 1323.023 kb on - strandat 1323.023 kb on - strandat 1323.040 kb on + strandat 1323.303 kb on + strand, within SMa2349at 1323.558 kb on + strand, within SMa2349at 1323.640 kb on - strand, within SMa2349at 1323.642 kb on - strand, within SMa2349at 1323.658 kb on + strandat 1323.720 kb on + strandat 1323.909 kb on - strand, within SMa2351at 1323.929 kb on + strand, within SMa2351at 1323.966 kb on + strand, within SMa2351at 1323.967 kb on - strand, within SMa2351at 1324.066 kb on - strand, within SMa2351at 1324.066 kb on - strand, within SMa2351at 1324.072 kb on - strand, within SMa2351at 1324.095 kb on - strand, within SMa2351at 1324.095 kb on - strand, within SMa2351at 1324.413 kb on + strand, within SMa2351

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,322,062 - +1.5
1,322,245 + SMa2347 0.33 +0.0
1,322,245 + SMa2347 0.33 -0.0
1,322,246 - SMa2347 0.33 +1.0
1,322,388 - SMa2347 0.54 -0.1
1,322,391 + SMa2347 0.54 -0.9
1,322,392 - SMa2347 0.54 -0.3
1,322,647 - -0.4
1,322,647 - -1.1
1,322,732 + +1.0
1,322,816 - +0.2
1,322,862 - -2.0
1,323,002 - +2.0
1,323,015 + -1.6
1,323,022 + -0.6
1,323,023 - +0.0
1,323,023 - +0.2
1,323,040 + -1.8
1,323,303 + SMa2349 0.37 -1.2
1,323,558 + SMa2349 0.77 -0.1
1,323,640 - SMa2349 0.89 -1.0
1,323,642 - SMa2349 0.90 -0.2
1,323,658 + -0.4
1,323,720 + +0.5
1,323,909 - SMa2351 0.21 +2.1
1,323,929 + SMa2351 0.24 -0.4
1,323,966 + SMa2351 0.27 +0.0
1,323,967 - SMa2351 0.28 -1.0
1,324,066 - SMa2351 0.38 -0.7
1,324,066 - SMa2351 0.38 +0.3
1,324,072 - SMa2351 0.39 +0.2
1,324,095 - SMa2351 0.41 -0.1
1,324,095 - SMa2351 0.41 -0.9
1,324,413 + SMa2351 0.74 +0.9

Or see this region's nucleotide sequence