Strain Fitness in Sinorhizobium meliloti 1021 around SMa2289
Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,272,057 | - | SMa2287 | 0.13 | -0.6 | |
1,272,057 | - | SMa2287 | 0.13 | -0.8 | |
1,272,089 | - | SMa2287 | 0.16 | +0.5 | |
1,272,209 | + | SMa2287 | 0.29 | -0.8 | |
1,272,213 | + | SMa2287 | 0.29 | -0.3 | |
1,272,423 | - | SMa2287 | 0.52 | +1.0 | |
1,272,516 | - | SMa2287 | 0.62 | +0.5 | |
1,272,889 | + | +1.6 | |||
1,272,890 | - | +0.6 | |||
1,272,946 | + | -0.2 | |||
1,272,946 | + | +1.9 | |||
1,272,946 | + | -1.2 | |||
1,272,947 | - | -2.4 | |||
1,272,947 | - | -1.3 | |||
1,272,947 | - | -0.2 | |||
1,272,947 | - | +0.3 | |||
1,272,947 | - | +0.3 | |||
1,272,947 | - | -0.2 | |||
1,272,947 | - | +0.3 | |||
1,273,048 | - | -0.5 | |||
1,273,279 | + | SMa2289 | 0.68 | -1.8 | |
1,273,549 | + | SMa2291 | 0.13 | +2.3 | |
1,273,552 | + | SMa2291 | 0.13 | +0.8 | |
1,273,552 | + | SMa2291 | 0.13 | +0.0 | |
1,273,553 | - | SMa2291 | 0.13 | -0.2 | |
1,273,604 | - | SMa2291 | 0.18 | -0.2 | |
1,273,604 | - | SMa2291 | 0.18 | +3.6 | |
1,273,604 | - | SMa2291 | 0.18 | -0.4 | |
1,273,618 | + | SMa2291 | 0.19 | +0.6 | |
1,273,619 | - | SMa2291 | 0.19 | -1.0 | |
1,273,631 | - | SMa2291 | 0.20 | +0.2 | |
1,273,765 | + | SMa2291 | 0.32 | -0.1 | |
1,273,996 | + | SMa2291 | 0.53 | +1.0 | |
1,273,997 | - | SMa2291 | 0.53 | +0.1 | |
1,273,997 | - | SMa2291 | 0.53 | -0.3 |
Or see this region's nucleotide sequence