Strain Fitness in Sinorhizobium meliloti 1021 around SMa1867

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1864 and SMa1867 are separated by 108 nucleotidesSMa1867 and SMa1869 are separated by 235 nucleotides SMa1864: SMa1864 - ABC transporter ATP-binding protein, at 1,058,447 to 1,060,102 SMa1864 SMa1867: SMa1867 - AsnC family transcriptional regulator, at 1,060,211 to 1,060,687 SMa1867 SMa1869: SMa1869 - deaminase, at 1,060,923 to 1,062,248 SMa1869 Position (kb) 1060 1061Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1059.372 kb on - strand, within SMa1864at 1059.447 kb on + strand, within SMa1864at 1059.555 kb on - strand, within SMa1864at 1059.620 kb on + strand, within SMa1864at 1059.620 kb on + strand, within SMa1864at 1059.621 kb on - strand, within SMa1864at 1059.879 kb on - strand, within SMa1864at 1059.941 kb on + strandat 1059.941 kb on + strandat 1059.941 kb on + strandat 1059.941 kb on + strandat 1059.942 kb on - strandat 1059.942 kb on - strandat 1059.942 kb on - strandat 1059.942 kb on - strandat 1059.982 kb on + strandat 1060.001 kb on + strandat 1060.001 kb on + strandat 1060.002 kb on - strandat 1060.088 kb on + strandat 1060.089 kb on - strandat 1060.147 kb on - strandat 1060.147 kb on - strandat 1060.284 kb on + strand, within SMa1867at 1060.335 kb on + strand, within SMa1867at 1060.372 kb on - strand, within SMa1867at 1060.378 kb on - strand, within SMa1867at 1060.378 kb on - strand, within SMa1867at 1060.533 kb on + strand, within SMa1867at 1060.543 kb on + strand, within SMa1867at 1060.544 kb on - strand, within SMa1867at 1060.546 kb on - strand, within SMa1867at 1060.546 kb on - strand, within SMa1867at 1060.546 kb on - strand, within SMa1867at 1060.762 kb on - strandat 1061.023 kb on - strandat 1061.229 kb on + strand, within SMa1869at 1061.300 kb on - strand, within SMa1869at 1061.309 kb on + strand, within SMa1869at 1061.309 kb on + strand, within SMa1869at 1061.310 kb on - strand, within SMa1869

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,059,372 - SMa1864 0.56 +0.4
1,059,447 + SMa1864 0.60 -2.5
1,059,555 - SMa1864 0.67 +0.2
1,059,620 + SMa1864 0.71 +0.7
1,059,620 + SMa1864 0.71 -0.4
1,059,621 - SMa1864 0.71 +0.5
1,059,879 - SMa1864 0.86 -1.9
1,059,941 + -0.3
1,059,941 + -0.3
1,059,941 + -0.8
1,059,941 + -1.3
1,059,942 - -0.4
1,059,942 - +0.4
1,059,942 - -0.4
1,059,942 - -0.3
1,059,982 + -0.2
1,060,001 + -0.2
1,060,001 + +0.5
1,060,002 - +0.5
1,060,088 + +0.1
1,060,089 - +0.3
1,060,147 - -0.3
1,060,147 - +1.0
1,060,284 + SMa1867 0.15 +1.6
1,060,335 + SMa1867 0.26 -0.3
1,060,372 - SMa1867 0.34 -0.2
1,060,378 - SMa1867 0.35 +0.5
1,060,378 - SMa1867 0.35 +0.7
1,060,533 + SMa1867 0.68 +1.0
1,060,543 + SMa1867 0.70 +2.2
1,060,544 - SMa1867 0.70 +0.3
1,060,546 - SMa1867 0.70 +0.0
1,060,546 - SMa1867 0.70 -3.4
1,060,546 - SMa1867 0.70 +0.7
1,060,762 - -0.4
1,061,023 - +1.0
1,061,229 + SMa1869 0.23 -0.3
1,061,300 - SMa1869 0.28 -0.5
1,061,309 + SMa1869 0.29 -0.0
1,061,309 + SMa1869 0.29 +0.2
1,061,310 - SMa1869 0.29 +0.7

Or see this region's nucleotide sequence