Strain Fitness in Sinorhizobium meliloti 1021 around SMa1860

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1857 and SMa1860 are separated by 69 nucleotidesSMa1860 and SMa1862 are separated by 91 nucleotides SMa1857: SMa1857 - hydrolase, at 1,054,005 to 1,054,865 SMa1857 SMa1860: SMa1860 - ABC transporter substrate-binding protein, at 1,054,935 to 1,056,545 SMa1860 SMa1862: SMa1862 - ABC transporter permease, at 1,056,637 to 1,057,587 SMa1862 Position (kb) 1054 1055 1056 1057Strain fitness (log2 ratio) -2 -1 0 1 2at 1054.096 kb on - strand, within SMa1857at 1054.096 kb on - strand, within SMa1857at 1054.096 kb on - strand, within SMa1857at 1054.096 kb on - strand, within SMa1857at 1054.180 kb on - strand, within SMa1857at 1054.315 kb on - strand, within SMa1857at 1054.359 kb on + strand, within SMa1857at 1054.575 kb on - strand, within SMa1857at 1054.692 kb on + strand, within SMa1857at 1054.976 kb on + strandat 1054.977 kb on - strandat 1055.120 kb on + strand, within SMa1860at 1055.196 kb on + strand, within SMa1860at 1055.197 kb on - strand, within SMa1860at 1055.217 kb on + strand, within SMa1860at 1055.218 kb on - strand, within SMa1860at 1055.218 kb on - strand, within SMa1860at 1055.219 kb on + strand, within SMa1860at 1055.490 kb on - strand, within SMa1860at 1055.490 kb on - strand, within SMa1860at 1055.641 kb on - strand, within SMa1860at 1055.823 kb on + strand, within SMa1860at 1055.823 kb on + strand, within SMa1860at 1055.824 kb on - strand, within SMa1860at 1055.824 kb on - strand, within SMa1860at 1055.892 kb on + strand, within SMa1860at 1055.893 kb on - strand, within SMa1860at 1055.893 kb on - strand, within SMa1860at 1055.938 kb on + strand, within SMa1860at 1055.983 kb on - strand, within SMa1860at 1056.058 kb on + strand, within SMa1860at 1056.059 kb on - strand, within SMa1860at 1056.274 kb on - strand, within SMa1860at 1056.274 kb on - strand, within SMa1860at 1056.306 kb on + strand, within SMa1860at 1056.307 kb on - strand, within SMa1860at 1056.327 kb on - strand, within SMa1860at 1056.381 kb on + strand, within SMa1860at 1056.382 kb on - strand, within SMa1860at 1056.382 kb on - strand, within SMa1860at 1056.435 kb on + strandat 1056.436 kb on - strandat 1056.438 kb on - strandat 1056.470 kb on + strandat 1056.525 kb on + strandat 1056.525 kb on + strandat 1056.526 kb on - strandat 1056.890 kb on - strand, within SMa1862at 1056.890 kb on - strand, within SMa1862at 1056.890 kb on - strand, within SMa1862at 1056.890 kb on - strand, within SMa1862at 1056.890 kb on - strand, within SMa1862at 1056.890 kb on - strand, within SMa1862at 1057.003 kb on - strand, within SMa1862at 1057.120 kb on + strand, within SMa1862at 1057.189 kb on + strand, within SMa1862at 1057.189 kb on + strand, within SMa1862at 1057.189 kb on + strand, within SMa1862at 1057.190 kb on - strand, within SMa1862at 1057.190 kb on - strand, within SMa1862at 1057.283 kb on - strand, within SMa1862at 1057.283 kb on - strand, within SMa1862at 1057.393 kb on + strand, within SMa1862at 1057.393 kb on + strand, within SMa1862at 1057.435 kb on + strand, within SMa1862at 1057.436 kb on - strand, within SMa1862at 1057.443 kb on + strand, within SMa1862

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,054,096 - SMa1857 0.11 -1.2
1,054,096 - SMa1857 0.11 -0.3
1,054,096 - SMa1857 0.11 -1.4
1,054,096 - SMa1857 0.11 -0.7
1,054,180 - SMa1857 0.20 -0.4
1,054,315 - SMa1857 0.36 -0.5
1,054,359 + SMa1857 0.41 +0.2
1,054,575 - SMa1857 0.66 -0.0
1,054,692 + SMa1857 0.80 +0.1
1,054,976 + -0.4
1,054,977 - +0.7
1,055,120 + SMa1860 0.11 -0.3
1,055,196 + SMa1860 0.16 +0.1
1,055,197 - SMa1860 0.16 +1.0
1,055,217 + SMa1860 0.18 -0.4
1,055,218 - SMa1860 0.18 +0.1
1,055,218 - SMa1860 0.18 +0.2
1,055,219 + SMa1860 0.18 +0.5
1,055,490 - SMa1860 0.34 -0.5
1,055,490 - SMa1860 0.34 -0.0
1,055,641 - SMa1860 0.44 +0.9
1,055,823 + SMa1860 0.55 +2.0
1,055,823 + SMa1860 0.55 +0.4
1,055,824 - SMa1860 0.55 +0.6
1,055,824 - SMa1860 0.55 +0.4
1,055,892 + SMa1860 0.59 +0.2
1,055,893 - SMa1860 0.59 -0.5
1,055,893 - SMa1860 0.59 +1.4
1,055,938 + SMa1860 0.62 -0.3
1,055,983 - SMa1860 0.65 +0.2
1,056,058 + SMa1860 0.70 -1.0
1,056,059 - SMa1860 0.70 +0.9
1,056,274 - SMa1860 0.83 +0.4
1,056,274 - SMa1860 0.83 +0.0
1,056,306 + SMa1860 0.85 +0.1
1,056,307 - SMa1860 0.85 -2.1
1,056,327 - SMa1860 0.86 +0.4
1,056,381 + SMa1860 0.90 +0.1
1,056,382 - SMa1860 0.90 +0.7
1,056,382 - SMa1860 0.90 -0.1
1,056,435 + -1.4
1,056,436 - -1.3
1,056,438 - -1.1
1,056,470 + -2.0
1,056,525 + +0.9
1,056,525 + -0.6
1,056,526 - +0.0
1,056,890 - SMa1862 0.27 -0.0
1,056,890 - SMa1862 0.27 +1.4
1,056,890 - SMa1862 0.27 +0.3
1,056,890 - SMa1862 0.27 -0.6
1,056,890 - SMa1862 0.27 +1.2
1,056,890 - SMa1862 0.27 +0.6
1,057,003 - SMa1862 0.38 +2.6
1,057,120 + SMa1862 0.51 +0.8
1,057,189 + SMa1862 0.58 +0.3
1,057,189 + SMa1862 0.58 +0.7
1,057,189 + SMa1862 0.58 -1.3
1,057,190 - SMa1862 0.58 -1.1
1,057,190 - SMa1862 0.58 -0.6
1,057,283 - SMa1862 0.68 +0.3
1,057,283 - SMa1862 0.68 +0.2
1,057,393 + SMa1862 0.79 -0.9
1,057,393 + SMa1862 0.79 -0.5
1,057,435 + SMa1862 0.84 -0.3
1,057,436 - SMa1862 0.84 +0.8
1,057,443 + SMa1862 0.85 -0.5

Or see this region's nucleotide sequence