Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1857 and SMa1860 are separated by 69 nucleotides SMa1860 and SMa1862 are separated by 91 nucleotides
SMa1857: SMa1857 - hydrolase, at 1,054,005 to 1,054,865
SMa1857
SMa1860: SMa1860 - ABC transporter substrate-binding protein, at 1,054,935 to 1,056,545
SMa1860
SMa1862: SMa1862 - ABC transporter permease, at 1,056,637 to 1,057,587
SMa1862
Position (kb)
1054
1055
1056
1057 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1054.096 kb on - strand, within SMa1857 at 1054.096 kb on - strand, within SMa1857 at 1054.096 kb on - strand, within SMa1857 at 1054.096 kb on - strand, within SMa1857 at 1054.180 kb on - strand, within SMa1857 at 1054.315 kb on - strand, within SMa1857 at 1054.359 kb on + strand, within SMa1857 at 1054.575 kb on - strand, within SMa1857 at 1054.692 kb on + strand, within SMa1857 at 1054.976 kb on + strand at 1054.977 kb on - strand at 1055.120 kb on + strand, within SMa1860 at 1055.196 kb on + strand, within SMa1860 at 1055.197 kb on - strand, within SMa1860 at 1055.217 kb on + strand, within SMa1860 at 1055.218 kb on - strand, within SMa1860 at 1055.218 kb on - strand, within SMa1860 at 1055.219 kb on + strand, within SMa1860 at 1055.490 kb on - strand, within SMa1860 at 1055.490 kb on - strand, within SMa1860 at 1055.641 kb on - strand, within SMa1860 at 1055.823 kb on + strand, within SMa1860 at 1055.823 kb on + strand, within SMa1860 at 1055.824 kb on - strand, within SMa1860 at 1055.824 kb on - strand, within SMa1860 at 1055.892 kb on + strand, within SMa1860 at 1055.893 kb on - strand, within SMa1860 at 1055.893 kb on - strand, within SMa1860 at 1055.938 kb on + strand, within SMa1860 at 1055.983 kb on - strand, within SMa1860 at 1056.058 kb on + strand, within SMa1860 at 1056.059 kb on - strand, within SMa1860 at 1056.274 kb on - strand, within SMa1860 at 1056.274 kb on - strand, within SMa1860 at 1056.306 kb on + strand, within SMa1860 at 1056.307 kb on - strand, within SMa1860 at 1056.327 kb on - strand, within SMa1860 at 1056.381 kb on + strand, within SMa1860 at 1056.382 kb on - strand, within SMa1860 at 1056.382 kb on - strand, within SMa1860 at 1056.435 kb on + strand at 1056.436 kb on - strand at 1056.438 kb on - strand at 1056.470 kb on + strand at 1056.525 kb on + strand at 1056.525 kb on + strand at 1056.526 kb on - strand at 1056.890 kb on - strand, within SMa1862 at 1056.890 kb on - strand, within SMa1862 at 1056.890 kb on - strand, within SMa1862 at 1056.890 kb on - strand, within SMa1862 at 1056.890 kb on - strand, within SMa1862 at 1056.890 kb on - strand, within SMa1862 at 1057.003 kb on - strand, within SMa1862 at 1057.120 kb on + strand, within SMa1862 at 1057.189 kb on + strand, within SMa1862 at 1057.189 kb on + strand, within SMa1862 at 1057.189 kb on + strand, within SMa1862 at 1057.190 kb on - strand, within SMa1862 at 1057.190 kb on - strand, within SMa1862 at 1057.283 kb on - strand, within SMa1862 at 1057.283 kb on - strand, within SMa1862 at 1057.393 kb on + strand, within SMa1862 at 1057.393 kb on + strand, within SMa1862 at 1057.435 kb on + strand, within SMa1862 at 1057.436 kb on - strand, within SMa1862 at 1057.443 kb on + strand, within SMa1862
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,054,096 - SMa1857 0.11 -1.2 1,054,096 - SMa1857 0.11 -0.3 1,054,096 - SMa1857 0.11 -1.4 1,054,096 - SMa1857 0.11 -0.7 1,054,180 - SMa1857 0.20 -0.4 1,054,315 - SMa1857 0.36 -0.5 1,054,359 + SMa1857 0.41 +0.2 1,054,575 - SMa1857 0.66 -0.0 1,054,692 + SMa1857 0.80 +0.1 1,054,976 + -0.4 1,054,977 - +0.7 1,055,120 + SMa1860 0.11 -0.3 1,055,196 + SMa1860 0.16 +0.1 1,055,197 - SMa1860 0.16 +1.0 1,055,217 + SMa1860 0.18 -0.4 1,055,218 - SMa1860 0.18 +0.1 1,055,218 - SMa1860 0.18 +0.2 1,055,219 + SMa1860 0.18 +0.5 1,055,490 - SMa1860 0.34 -0.5 1,055,490 - SMa1860 0.34 -0.0 1,055,641 - SMa1860 0.44 +0.9 1,055,823 + SMa1860 0.55 +2.0 1,055,823 + SMa1860 0.55 +0.4 1,055,824 - SMa1860 0.55 +0.6 1,055,824 - SMa1860 0.55 +0.4 1,055,892 + SMa1860 0.59 +0.2 1,055,893 - SMa1860 0.59 -0.5 1,055,893 - SMa1860 0.59 +1.4 1,055,938 + SMa1860 0.62 -0.3 1,055,983 - SMa1860 0.65 +0.2 1,056,058 + SMa1860 0.70 -1.0 1,056,059 - SMa1860 0.70 +0.9 1,056,274 - SMa1860 0.83 +0.4 1,056,274 - SMa1860 0.83 +0.0 1,056,306 + SMa1860 0.85 +0.1 1,056,307 - SMa1860 0.85 -2.1 1,056,327 - SMa1860 0.86 +0.4 1,056,381 + SMa1860 0.90 +0.1 1,056,382 - SMa1860 0.90 +0.7 1,056,382 - SMa1860 0.90 -0.1 1,056,435 + -1.4 1,056,436 - -1.3 1,056,438 - -1.1 1,056,470 + -2.0 1,056,525 + +0.9 1,056,525 + -0.6 1,056,526 - +0.0 1,056,890 - SMa1862 0.27 -0.0 1,056,890 - SMa1862 0.27 +1.4 1,056,890 - SMa1862 0.27 +0.3 1,056,890 - SMa1862 0.27 -0.6 1,056,890 - SMa1862 0.27 +1.2 1,056,890 - SMa1862 0.27 +0.6 1,057,003 - SMa1862 0.38 +2.6 1,057,120 + SMa1862 0.51 +0.8 1,057,189 + SMa1862 0.58 +0.3 1,057,189 + SMa1862 0.58 +0.7 1,057,189 + SMa1862 0.58 -1.3 1,057,190 - SMa1862 0.58 -1.1 1,057,190 - SMa1862 0.58 -0.6 1,057,283 - SMa1862 0.68 +0.3 1,057,283 - SMa1862 0.68 +0.2 1,057,393 + SMa1862 0.79 -0.9 1,057,393 + SMa1862 0.79 -0.5 1,057,435 + SMa1862 0.84 -0.3 1,057,436 - SMa1862 0.84 +0.8 1,057,443 + SMa1862 0.85 -0.5
Or see this region's nucleotide sequence